Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5034 86.0 1e-11 >seq5034 Length=2374447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/185 (72%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 || |||||||| || | || || ||||| |||| || || |||||||||||| Sbjct 538372 CACTTGAATGATGGAGACTTTGTCCTCTTCAACCGGCAGCCTAGTCTTCATAAAATGTCT 538431 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAAT--GTAAG 305424 || |||| || | | |||| ||||| || | ||||| |||| ||| || || Sbjct 538432 ATTATGGGCCACAGAATCAAG--ATTATGCCTTACTCAACATTCAGATTGAATTTGTCAG 538489 Query 305425 TG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| |||||||||||||||||||| || | Sbjct 538490 TGACAT---CCCCATATAATGCTGATTTTGATGGGGATGAAATGAATATGCATGTTCCGC 538546 Query 305484 AATCA 305488 | ||| Sbjct 538547 AGTCA 538551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186548138891205