Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1810 102 5e-17 seq3224 98.7 7e-16 seq2214 98.7 7e-16 seq790 98.7 7e-16 seq5369 87.8 1e-12 >seq1810 Length=4673341 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||| || || || || |||||||||||||| |||| | Sbjct 4156966 CCTCCTCTGAGACGGAGCACCAGGTGAAGGGTCGATTCCTTTTGTATGTTGTAGTCGGCG 4157025 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | || || |||||||| |||| | |||||| ||| | || Sbjct 4157026 AGGGTCCTCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 4157085 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | ||||| ||||| ||| || |||| |||| || | |||||| | | | |||| Sbjct 4157086 ATCCCTTCCTTGTCCTGAATCTT-GGTTTTCACATTATCTATGGTGTC-CGAGCTCTCCA 4157143 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| |||||||| || | || || |||||||||||||| Sbjct 4157144 CCTCAAGAGTGATGGTTTTACCAGTAAGGGTCTTCACAAAGATCTGCAT 4157192 >seq3224 Length=4215183 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||||||||| |||| |||| || || |||||||| Sbjct 2572746 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 2572805 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| || ||| |||| ||| Sbjct 2572806 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CAT 2572864 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||||| || || || || | || ||||| || || || | || || | Sbjct 2572865 TGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTTATCGTCTTCCCCGTGAGGGTCTTCA 2572924 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 2572925 CGAAGATCTGCAT 2572937 >seq2214 Length=9977371 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||||||||| |||| |||| || || |||||||| Sbjct 6800434 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 6800493 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| || ||| |||| ||| Sbjct 6800494 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CAT 6800552 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||||| || || || || | || ||||| || || || | || || | Sbjct 6800553 TGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTTATCGTCTTCCCCGTGAGGGTCTTCA 6800612 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 6800613 CGAAGATCTGCAT 6800625 >seq790 Length=1848252 Score = 98.7 bits (108), Expect = 7e-16 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| | |||||| || || ||| ||| || || ||| Sbjct 1588240 AAAATCTGCATGCCACCCCTCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATG 1588181 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | || || | | || || | || || || ||||| |||| | |||| Sbjct 1588180 TTGTAGTCAGCAAGGGTTCTCCCATCCTCAAGCTGCTTCCCAGCAAAGATCAGCCTCTGC 1588121 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||| || ||||| ||||||| || ||||| |||| |||||| Sbjct 1588120 TGGTCTGGGGGAATACCCTCCTTGTCCTGAATTTTCGCCTT-AACATTGTCAATGGTGTC 1588062 Query 33690 GCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 | | | || || |||| |||||||| || || || | || || ||||||||||||| Sbjct 1588061 -CGAGCTCTCGACCTCAAGGGTGATCGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCA 1588003 Query 33749 T 33749 | Sbjct 1588002 T 1588002 Score = 84.2 bits (92), Expect = 1e-11 Identities = 167/241 (69%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || || ||||| | |||||| || || ||| ||| || || ||| Sbjct 1587784 AAAATCTGCATTCCTCCCCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATG 1587725 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || || || | || || | | |||| || | ||| || || ||||||||||| | |||| Sbjct 1587724 TTATAGTCAGCAAGAGTCCTTCCGTCCTCAAGTTGCTTGCCAGCAAAAATCAACCTCTGC 1587665 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||||| ||||| ||| || ||| |||| || | |||||| Sbjct 1587664 TGGTCCGGGGGGATTCCTTCCTTGTCCTGAATCTTGGCCTTC-ACATTATCAATGGTGTC 1587606 Query 33690 GCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 | | | ||||| || | ||||| || || || || | || || || |||||||||| Sbjct 1587605 -CGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATCTGCA 1587547 Query 33749 T 33749 | Sbjct 1587546 T 1587546 >seq5369 Length=1591519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | |||| || |||||| ||| ||||| |||||||| |||| Sbjct 1427005 CCTCCTCTCAAACGGAGGACCAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGCA 1427064 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | || || |||||||| || | | |||||| || | || Sbjct 1427065 AGGGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGG 1427124 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | || || ||||| ||||||| | | |||| ||| | |||||| | | | || | Sbjct 1427125 ATCCCCTCCTTGTCCTGAATTTTC-GCCTTGACATTGTCAATGGTGTC-CGAGCTCTCAA 1427182 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | || || |||||||||||||| Sbjct 1427183 CCTCCAGGGTGATTGTCTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 1427231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328634274177600