Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq4293 105 2e-18 seq6319 96.9 1e-15 seq4399 96.9 1e-15 seq3240 87.8 5e-13 >seq4293 Length=5823730 Score = 105 bits (116), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 || || || |||||||| || ||||| | | | || | | |||||||| || || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 ||||||||||| ||||| || || ||||| || || | || || ||||||||||| ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487 |||||||||||||| || ||||| || Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGC 2155111 >seq6319 Length=5966559 Score = 96.9 bits (106), Expect = 1e-15 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 20067 GTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG 20126 |||||||||| || || ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTG 1421186 Query 20127 TGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAA 20185 | | || || || ||| | ||| | || | ||||||| || |||||||| ||| Sbjct 1421185 ATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAA 1421126 Query 20186 GAGACCTATAACATCGTAGCCGCTCATGGTTA--CTTTG 20222 || || ||||| |||||||| ||||||||||| ||||| Sbjct 1421125 GAAACTTATAATATCGTAGCTGCTCATGGTTATTCTTTG 1421087 >seq4399 Length=3202280 Score = 96.9 bits (106), Expect = 1e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| ||||||||||||| ||| | || || | ||| || || | || || Sbjct 214286 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTT 214227 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||||||| ||||||||||||||||| || ||||| || Sbjct 214226 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 214186 >seq3240 Length=2626545 Score = 87.8 bits (96), Expect = 5e-13 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20298 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCA 20357 |||| || ||||| |||| || || | || ||||| || || || || ||||||| Sbjct 808433 TAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 20358 ACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417 | || ||||| || | | || | | |||||||| ||| ||||||||||||| ||| Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAA 20460 | || || ||||| || || | || || ||||||||||| || Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148798039412490