Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq4293 116 1e-21 seq4399 113 1e-20 seq3240 100 8e-17 >seq4293 Length=5823730 Score = 116 bits (128), Expect = 1e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| || ||||||||||||||| |||| || ||||||||||| || | ||||| Sbjct 2155211 GGTCGTGTAATAAATACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTT 2155152 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||||||||||||||||||| || || || ||| Sbjct 2155151 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 2155110 >seq4399 Length=3202280 Score = 113 bits (124), Expect = 1e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| |||||||||||||||||| || | || |||| |||||| || | ||||| Sbjct 214286 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTT 214227 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||||||||||||||||||| || || || ||| Sbjct 214226 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 214185 >seq3240 Length=2626545 Score = 100 bits (110), Expect = 8e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 29426 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTA 29485 |||| || ||||| |||| || || | || ||||| || || || || ||||| | Sbjct 808433 TAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 29486 ACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTC 29545 | || ||||| || | | || | | |||||||| |||||||||||||||||| || Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 29546 TCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAA 29588 | || ||||||||||| || | ||||| |||||||| ||||| Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146635286512130