Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq4293 104 7e-18 seq3240 102 2e-17 seq4399 95.1 3e-15 seq6319 91.5 4e-14 >seq4293 Length=5823730 Score = 104 bits (114), Expect = 7e-18 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||| | ||||| || || || ||||| | | |||| | | |||||||| || || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 ||||||||||| ||||| || || |||||||| || | || || ||||| ||||||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 19681 GCTCATAACTTCCCACTTGA 19700 |||||||||||||| || || Sbjct 2155136 GCTCATAACTTCCCTCTAGA 2155117 >seq3240 Length=2626545 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 19519 GGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAAC 19578 || || |||||| | || | || | ||||| ||||| |||||| | ||||| || || Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 19579 TTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 19638 || ||||| || | |||| | | |||||||| ||| ||||||||||||| ||| | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 19639 AATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 || || |||||||| || | || || ||||| |||||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 95.1 bits (104), Expect = 3e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| ||||||||||||| ||| | || || | |||||| || | || || Sbjct 214286 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTT 214227 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||||||||||||||||||| || || Sbjct 214226 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 214192 >seq6319 Length=5966559 Score = 91.5 bits (100), Expect = 4e-14 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 19286 GTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG 19345 |||| |||||||| || ||||| ||||| ||||| ||||| | || || || | | ||| Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTG 1421186 Query 19346 TGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAA 19404 | | ||||| || ||| | | || | || | || |||| || |||||||| ||| Sbjct 1421185 ATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAA 1421126 Query 19405 GAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 || |||||||| || || ||||||||||| |||| Sbjct 1421125 GAAACTTATAATATCGTAGCTGCTCATGGTTATT 1421092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141119626748490