Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4399 318 8e-81 seq3950 109 8e-18 seq4810 100 4e-15 seq666 95.1 2e-13 seq4939 91.5 2e-12 >seq4399 Length=3202280 Score = 318 bits (352), Expect = 8e-81 Identities = 413/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTA-CCAGCG 1455774 ||||| |||||| || ||| | || | || | ||||||| ||| || || | | Sbjct 384652 GAGCCTCTGCTGGCCGCGAACTCCGACAGGTTCTGCATGTTCCCAATCAAGTATCCCGAG 384593 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | | |||||||||||| || ||||| ||||||||||| ||||| || |||||||| |||| Sbjct 384592 G-TGTGGGAAATGTAC-AAGAAGGCGGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACC 384535 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 || | ||||| |||||||| | || | | || ||||||||||||| ||| | Sbjct 384534 TCTCCCAGGACACCCGCCACTGGGAGAATCTAACCTCCGGCGAGCGCCATTTCGTCACCC 384475 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 | ||||||| ||| ||||||||| || || ||||| ||||||||| |||| ||| Sbjct 384474 ATATCCTCGC-TTTCTTCGCCGCCTCTGACGGGATCGTCCTCGAGAACCTCGCCGCCCGG 384416 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || ||||| |||||||| | | ||||| || || || || |||||||||||||| Sbjct 384415 TTCATGAAGGAGGTCCAGATCTCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCCATT 384356 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || | ||| || || |||| |||||| |||||||| | | | Sbjct 384355 GAGAACATCCACTCCGAGATGTACAGTCTGCTCCTCGAGACCTACATCAAGGACTCCGCC 384296 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 |||||||||| ||| || || || ||||| || || || | |||| ||| ||||| || Sbjct 384295 GAGAAGGACCGCCTGTTCCGGGCGATCGAGACCGTCCCCTGCGTGAAGAAGAAGGCGGAG 384236 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| ||| |||||||| || ||| ||| | || || ||| || | | | Sbjct 384235 TGGGCCATGCAGTGGATC------GACGGCTCCGAGTCGTTCGCGGAGAGGGTGATTGCA 384182 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| |||| ||||| ||||| ||||| || || ||||| |||||||| ||||| ||| Sbjct 384181 TTTGCCTGCGTGGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAG 384122 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| || || ||||| || || Sbjct 384121 AAGCGGGGGCTGATGCCGGGGCT 384099 Score = 134 bits (148), Expect = 2e-25 Identities = 158/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || || || |||||||||| |||||||| |||| |||||||| ||||| | || Sbjct 383980 GACGCGGTGGAGATCGAGAGGGAGTTTGTATGCGACGCGCTGCCGTGCGCGCTGGTGGGG 383921 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 ||||||| | | |||||| | |||||||| || || || || ||||| ||||| | || Sbjct 383920 ATGAACGGCGAC-CTCATGGGGCAGTACATAGAGTTC-GTGGCGGACCGGCTGCTGGTGG 383863 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 || | |||||||| |||| ||| |||||||||| ||| ||||||||| |||| Sbjct 383862 CGTTGGGCTGCGG-GAAGGTGTACGACGCGGCCAACCCCTTCGACTGGATGGAGCTGATA 383804 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||| | || ||||||||||| |||||| Sbjct 383803 TCGCTGCAAGGGAAGACCAACTTCTTCGAG 383774 >seq3950 Length=3597155 Score = 109 bits (120), Expect = 8e-18 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||||| |||||||| |||||| || | | ||| ||| |||| |||| ||||| Sbjct 3053622 CAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGGG--ATC-TCCAGCAAGGCCATGGG 3053569 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||||||||| || |||||||||| |||| ||| | ||| | ||||| Sbjct 3053568 CATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCATCCCGCCT 3053509 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 || |||| ||||||| ||| ||| | | || ||||||||||||||||| ||||| Sbjct 3053508 CGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCCGCCT 3053449 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | || || || |||| ||||||||| || ||||| |||| Sbjct 3053448 TGTCCTCCCTGGGGAGCTCGCCAAGCACGCCGTGTCTGAGGGGACCA 3053402 >seq4810 Length=5543293 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| ||||| || | ||||| ||| || | |||| || Sbjct 227446 ATCTTCAAGGTCCTGAAGCAGGTCCACCCG-GA--CATTGGG--ATC-TCAAGCAAGGCC 227393 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || | |||||||| |||| ||| | ||||| Sbjct 227392 ATGGGGATCATGAACAGCTTCATTAACGACATCTTCGAGAAGCTCGCCCAGGAGGCATCC 227333 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | ||||||| ||| ||| | | |||||||||||||||||||| Sbjct 227332 CGCCTTGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCGCCGTC 227273 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | | ||||| || |||| ||||||||| || ||||| |||| Sbjct 227272 AGGCTCGTCCTCCCTGGCGAGCTCGCCAAGCACGCCGTGTCGGAGGGGACCA 227221 >seq666 Length=4378875 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||| ||||||||||| ||||| || | | ||| ||| |||| |||| ||||| Sbjct 185891 CAAGGTCCTCAAGCAGGTCCACCCT-GA--CATCGGG--ATC-TCCAGCAAGGCCATGGG 185838 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| |||||| || |||||||||| |||| ||| | |||||| | || Sbjct 185837 GATTATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCGAGGCT 185778 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 ||| | | ||||||| ||| ||| | || ||||||||||| ||||| | || Sbjct 185777 CGCGAGGTACAACAAGAAGCCCACCATCACTTCCCGGGAGATCCAGACTGCCGTCAGGCT 185718 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | ||| ||| |||||| |||||| ||||| |||||||||| Sbjct 185717 CGTCCTCCCCGGTGAATTGGCCAAGCACGCTGTCTCTGAGGGCACCA 185671 >seq4939 Length=4123586 Score = 91.5 bits (100), Expect = 2e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| |||||| || | ||||| ||| || | |||| || Sbjct 902225 ATCTTCAAGGTCCTGAAGCAGGTTCACCCC-GA--CATTGGG--ATC-TCGAGCAAGGCC 902172 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| | | | ||||| | Sbjct 902171 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCCCAGGAGGCTTCT 902112 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | |||| | | ||||||| ||| ||| | || ||||||||||| || || Sbjct 902111 AGGTTGGCCAGGTACAACAAGAAGCCCACCATCACTTCCCGGGAGATCCAGACTGCGGTC 902052 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || ||| ||| || || || | |||||||||||| |||||||||| Sbjct 902051 AGGCTCGTCCTGCCCGGTGAGCTTGCGAAGCACGCCGTCTCTGAGGGCACCA 902000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176132455759610