Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2507 161 1e-34 seq4293 132 6e-26 seq3240 122 1e-22 seq4399 102 9e-17 seq2492 91.5 2e-13 >seq2507 Length=3123735 Score = 161 bits (178), Expect = 1e-34 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 160198 GGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAA 160257 ||||| ||| | ||||| ||||| || || ||||| |||||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 160258 GATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCT 160317 |||||||||||||| || ||||||||||| || || || || || ||||| |||||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 160318 TGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCT 160377 |||||||| || ||||| || ||||||||| |||| ||||| ||||| || ||||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 160378 AGAGGTAACGCACT 160391 | || ||||| || Sbjct 2652107 CGTGGAAACGCTCT 2652094 Score = 114 bits (126), Expect = 1e-20 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 159893 AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 159952 |||||||| | || ||||| | | ||| || ||||||||||| ||||||||| || | | Sbjct 2014071 AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTGG 2014013 Query 159953 G---TGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAG 160009 | || || || | || || |||||||||||||| |||| || || | ||||||| Sbjct 2014012 GCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAAG 2013953 Query 160010 ATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATT 160069 |||| || ||||| ||||| || ||| | || ||||||| ||| | ||||||| Sbjct 2013952 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTATT 2013893 Query 160070 CTATGGTCACTGCAAA 160085 | |||||||||| || Sbjct 2013892 CAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||||| || |||||||| |||||||| | | ||||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 || ||||| ||| | || ||||||||| ||||||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCTG 158663 || || |||||||| || || || ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 122 bits (134), Expect = 1e-22 Identities = 126/163 (77%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 158471 GGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCA 158528 || |||||||| || || | || | ||| || ||||| |||||||| || ||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGG--TATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 158529 ACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTAC 158588 | |||||||| || | ||||| |||| |||||||| | || || ||||| ||| | Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 158589 TGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158631 | ||||||||| ||||||||||||||||||||||| ||||| Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 158547 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTG 158606 ||||| |||| |||||||| | || || ||||| ||| | | ||||||| | |||| Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 158607 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662 ||||||||||||||||||| ||||| || || |||||||| || || || |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq2492 Length=5361119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 159643 CGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTC 159702 || ||||| ||| | || || | ||| | ||||||||||||||||| || |||| || Sbjct 375415 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTA 375474 Query 159703 ATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAA 159761 |||||||| ||| |||| ||||||||| ||||||| ||| ||| | || ||||| || Sbjct 375475 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAA 375533 Query 159762 TGCTATTGC 159770 ||| || || Sbjct 375534 TGCAATCGC 375542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572899331466000