Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq2507 147 2e-30 seq3240 138 1e-27 seq4293 129 7e-25 seq4399 98.7 1e-15 >seq2507 Length=3123735 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 162507 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 162566 ||||| ||||| ||||| ||||| || || ||||| ||||||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 162567 GATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCA 162626 |||||||| |||||||| |||||||| || || ||||| | || ||||| | ||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 162627 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCT 162686 ||| | || || || || || ||||| ||| |||| |||||||| || ||||| || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 162687 AGAGGCAACGCCCTTTAAT 162705 | || ||||| ||||||| Sbjct 2652107 CGTGGAAACGCTCTTTAAT 2652089 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 162201 CAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 162260 ||||| || ||||| ||||| ||| ||| || ||||||||||| ||||||||| || | Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 162261 GG---TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAG 162317 || || || || |||| ||||| || || | ||| | |||||||| ||| || Sbjct 2014013 GGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAA 2013954 Query 162318 GATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTAT 162377 ||||| || ||||| || || || ||| | | || || | ||| | |||||| Sbjct 2013953 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTAT 2013894 Query 162378 TCTATGGTCACTGCAAA 162394 || |||||||||| || Sbjct 2013893 TCAGTGGTCACTGCTAA 2013877 >seq3240 Length=2626545 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 160755 GGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 160814 || |||||||| |||||| | ||| | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 160815 TTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTG 160874 |||||||| || | | ||| |||||||||||||| | || || ||||| || | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 160875 AATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 160915 || || ||| ||||||||||||||||||||||| ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| || |||||||| |||||||| | | | ||| |||||||||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 || ||||| || | || || || ||| ||||||||||||||||||||||| ||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCTG 160947 || || |||||||| || ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq4399 Length=3202280 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 160833 GATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGT 160892 ||| |||||||||||||| | || || ||||| || | | || || | | |||||| Sbjct 214295 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGT 214236 Query 160893 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 ||||||||||||||||| ||||| || || |||||||| || ||||| |||||| Sbjct 214235 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559382272911000