Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2507 120 4e-22 seq2492 86.0 8e-12 >seq2507 Length=3123735 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 183180 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAA 183239 || || ||||| || || ||||| ||||| || || || ||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 183240 GATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCT 183299 |||||||| || || || |||||||| || || || || | || ||||| | |||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 183300 TGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCT 183359 ||| |||| || ||||| || ||||||||| | || ||||| || || |||||||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 183360 AGAGGTAACGCACT 183373 | || ||||| || Sbjct 2652107 CGTGGAAACGCTCT 2652094 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 182875 AGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGG 182934 |||||||| | || |||||| | | ||| || ||||||||||| ||||||||| || ||| Sbjct 2014071 AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTGG 2014013 Query 182935 G---TGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAG 182991 | || || || || | ||||||||||||| ||| |||| ||||| | | ||||| Sbjct 2014012 GCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAAG 2013953 Query 182992 ATGGAGAACAGGCAAACACATT 183013 |||| || ||||| ||||| Sbjct 2013952 ATGGTGATGGTGCAAATACATT 2013931 >seq2492 Length=5361119 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 182625 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 182684 || ||||| ||| | || || || |||| ||| || ||||||||||| || |||| || Sbjct 375415 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTA 375474 Query 182685 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAA 182743 || ||||||||| | | ||||||||||||||||| ||| || | | ||||||| || Sbjct 375475 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAA 375533 Query 182744 TGCGATTGC 182752 ||| || || Sbjct 375534 TGCAATCGC 375542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614483882258400