Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2507 123 4e-23 seq3240 118 2e-21 seq4293 113 7e-20 >seq2507 Length=3123735 Score = 123 bits (136), Expect = 4e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729 || || ||||| || || ||||| ||||| || || ||| ||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789 |||||||| ||||||||||||||||| || || || || | |||||||| | | || Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCT 176849 |||||||| || ||||| || ||||| || |||||||||| || |||||||| Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 176850 AGAGGTAACGC 176860 | || ||||| Sbjct 2652107 CGTGGAAACGC 2652097 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 176365 AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 176424 |||||||| | || |||||| ||| ||| || ||||||||||| ||||||||| || | | Sbjct 2014071 AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTGG 2014013 Query 176425 G---TGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAG 176481 | || || ||||||| || |||||||| | ||| | |||||||| ||| ||||| Sbjct 2014012 GCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAAG 2013953 Query 176482 ATGGAGA 176488 |||| || Sbjct 2013952 ATGGTGA 2013946 >seq3240 Length=2626545 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 175263 GGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAAC 175322 ||||||||||| || || | ||| | ||| ||||| |||||||| ||||||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 175323 TTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTT 175382 |||||||| ||||| | || | |||||| | ||| | || || ||||| ||| || || Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 175383 AACAGAGCTGGTCTTGGGATGGAAGTAATGCATGA 175417 ||| | ||| ||||| |||||||| |||||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGA 808589 >seq4293 Length=5823730 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 175305 AACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAAC 175364 ||||| ||||||||||| |||||||| | ||| | || | |||||| | ||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 175365 ACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAAT 175424 || ||||| ||| |||||||| | ||| ||||| |||||||| |||||||| | ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 175425 GCACACAACTTCCCACTAGA 175444 || || |||||||| ||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGA 2155117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729770794691400