Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2507 116 4e-21 seq2492 82.4 9e-11 >seq2507 Length=3123735 Score = 116 bits (128), Expect = 4e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 180042 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAA 180101 ||||| ||||| ||||| ||||| || || ||||| ||||||||| | ||||| ||| Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 180102 GATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCA 180161 ||||| || ||||| || ||||||||||| || ||||| | || ||||| | ||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 180162 TGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 ||| |||| | ||||| || ||||| | |||||||||| || ||||| || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACC 2652109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 179737 AGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 179796 |||||||| | || ||||| | | ||| || ||||||||||| ||||||||| || | | Sbjct 2014071 AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTGG 2014013 Query 179797 GAGGAGCA---CTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAG 179853 | | || || || | ||||||||||| | ||| |||| ||||| | | ||||| Sbjct 2014012 GCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAAG 2013953 Query 179854 ATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATT 179913 |||| || |||||||| || || ||| | | || || | ||| | ||||||| Sbjct 2013952 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTATT 2013893 Query 179914 CTATGGTCACTGCAAA 179929 | |||||||||| || Sbjct 2013892 CAGTGGTCACTGCTAA 2013877 >seq2492 Length=5361119 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 179487 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 179546 || ||||| ||| | || || || |||| ||| || ||||||||||| || |||| || Sbjct 375415 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTA 375474 Query 179547 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG 179581 || ||||||||| | | ||||||||||||||||| Sbjct 375475 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 375509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605877755036400