Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4399 104 3e-17 seq281 86.0 9e-12 >seq4399 Length=3202280 Score = 104 bits (114), Expect = 3e-17 Identities = 231/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || || || | ||||| || || ||||| Sbjct 384041 GCAGGCGAAGTCGCAGTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAG 384100 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| || ||||| || |||||| || ||| | || || |||| Sbjct 384101 CCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATGGCA-CAGAAGCTCCCGGAGAAGA 384159 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATG 39792 |||| || || || |||||||||| | ||||| || | ||| | | | | Sbjct 384160 AGATCCCCTCCACGCAGGCAAATGCAATCACCCTCTCCGCGAACGACTCGGAGC--CGTC 384217 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||||| | ||||| || || |||||||| || || || | || || || || Sbjct 384218 GATCCACTGCATGGCCCACTCCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGCCCG 384277 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || || | || || | || || | || || || | | |||||| ||||| Sbjct 384278 GAACAGGCGGTCCTTCTCGGCGGAGTCCTTGATGTAGGTCTCGAGGAGCAGACTGTACAT 384337 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || |||||||| ||||| || ||||| || || || || Sbjct 384338 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 384379 >seq281 Length=1258992 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | ||||||||||| ||||||||||| | ||| | || || Sbjct 240192 GTTCCTGCATTAAAGAGCGTAGGAGATGCATGAGTGAACCACCGCTGAGACATCATATGA 240251 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||| ||| | || || || || || ||| ||||| | || || | ||||||| Sbjct 240252 TAGGTTCTAATGACAGAGTCAATGTCATCCTTATGGATTCCAACAGCAACCCTCATCAAC 240311 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || ||||| |||| || || || | | ||||| ||||| || | || || Sbjct 240312 ATGTGCTGGGGTCTCTCCACGACCTTCCCCTGGACCTTCAAGAGGTAAGACCTCTCAAGG 240371 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||||||||| || Sbjct 240372 GTTTTAAACCCAAAGTA 240388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686759354404200