Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1810 93.3 4e-14 seq790 89.7 4e-13 seq5369 84.2 2e-11 >seq1810 Length=4673341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | || ||| | |||||||| | || || || || || ||||||||||| || Sbjct 4157194 CCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTGCA 4157253 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| ||| | || |||||||| || || || |||| || | |||||| ||||| || Sbjct 4157254 AGAGTT-CGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAGG 4157312 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||| || | |||| | || | ||||| | ||| || Sbjct 4157313 GATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGAC 4157372 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||||| || ||||||||||| |||||||| Sbjct 4157373 CTCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCAT 4157420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || |||||||||||||| |||||| || | ||| | ||||| Sbjct 4157668 ACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGGCCAGTGTACGCCCATCTTCA 4157727 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||| || ||||| || | || || ||||| | Sbjct 4157728 AGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCCTGG 4157787 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| | || | | || | || || | | |||||| || || || || | ||| Sbjct 4157788 ATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCAACCTCCAGGGTAATCGTCTTG 4157847 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| || || ||||| Sbjct 4157848 CCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 >seq790 Length=1848252 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | |||| || | ||| || || || || ||||||||||| | Sbjct 1587316 CCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCC 1587257 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| ||||| ||||| ||| | ||||| | ||| || ||||| || Sbjct 1587256 AAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 1587197 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | || | ||||| | | || || Sbjct 1587196 ATTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGACC 1587137 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || || || ||||||||||| Sbjct 1587136 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCAT 1587090 >seq5369 Length=1591519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | |||||| | |||| || | || || ||||| || || || || ||| Sbjct 1427687 TGCCACCCCTCAACCGGAGGACCAGGTGGAGTGTGGACTCTTTCTGGATGTTATAATCGG 1427746 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||||||||| ||||| || | ||||| | ||| || ||||| | Sbjct 1427747 CCAAGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGGG 1427806 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | || | ||||| | | |||| Sbjct 1427807 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCGATGGTGTCGGAGCTCTCAA 1427866 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || || || || || || ||||||||||| Sbjct 1427867 CCTCAAGGGTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCAT 1427915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424844261454360