Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3953 113 6e-20 seq4399 105 8e-18 seq2229 93.3 5e-14 seq281 93.3 5e-14 seq2214 89.7 6e-13 >seq3953 Length=3923179 Score = 113 bits (124), Expect = 6e-20 Identities = 271/410 (66%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || |||||||| | || ||||| || |||||||| | || ||||| | || || Sbjct 3432986 TCGAGGATATCGGCACGGTTAGTTGCAGCAATAACAATGATACCAGTGTTTCCCTCGAAT 3432927 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | ||||||| || || || || ||||||||| || | Sbjct 3432926 CCATCCATCTCTGTCAAGAGCTGATTAAGAGTCTGCTCCCTTTCATCATTTCCTCCGCCA 3432867 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| | | |||| || || |||||||| ||||||| || ||||| || || Sbjct 3432866 ATTCCAGTTCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGG 3432807 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 3432806 GCATTCTCTTTGGCTTTCTTGAACAGATCACGAACTCTAGACGCACCAACACCAACAAAC 3432747 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 ||||| || || | | | ||| || ||||| ||| | |||||| || || Sbjct 3432746 ATCTCAACGAACTCAGAACCGGAGATGGAGAAAAATGGAACACCAGCTTCACCAGCAATT 3432687 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGG 11842 || |||||| || || ||||| || || || ||| | ||||| | ||| || Sbjct 3432686 GCCTTGGCGAGAAGAGTTTTTCCAGTTCCAGGAGGACCAACTAGAAGTACACCTTTAGGA 3432627 Query 11843 ATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || ||||||| | || | | || ||||| | ||| || || || || Sbjct 3432626 ATTCGGGCACCAACTGCAGTAAACCTTTCGGGCTTCTTCAGGAACTCAAC 3432577 >seq4399 Length=3202280 Score = 105 bits (116), Expect = 8e-18 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || | || || || || || |||||| || || ||||| || || Sbjct 384056 GTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCATCAGCCC 384115 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||||| ||| | || || ||||| ||||||||||||||| |||||||| || Sbjct 384116 CCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCTCCACGCA 384175 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||||| |||| | | || ||||| || || | || | ||| | ||| || Sbjct 384176 GGCAAATGCAATCACCCTCTCCGCGAACGACTCGGA---GCCGTCGATCCACTGCATGGC 384232 Query 122850 CCATTTCGCCTTCTTCT 122866 ||| | ||||||||||| Sbjct 384233 CCACTCCGCCTTCTTCT 384249 >seq2229 Length=2552774 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 || || || ||| |||||||||||||||| ||| ||| ||||||||||||||||| ||| Sbjct 51659 AACTATCGAGAGGCTTACGGACTGTTTGCATGCAACGGGATCCTCTTCAACCATGAGTCA 51600 Query 9345 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACC 9383 || | ||||| | ||||||||||| |||||| ||| Sbjct 51599 CCTCGTCGAGGCGAGAACTTTGTGACCCGGAAGATAACC 51561 >seq281 Length=1258992 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || ||||| || ||||| ||||| || || | ||| ||| ||||| | || Sbjct 240179 CTGGGGCCTCGGTGTTCCTGCATTAAAGAGCGTAGGAGATGCATGAGTGAACCACCGCTG 240238 Query 112000 GGACATCTTGTCGTATGTCTCCAA-GACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| | | || || || || |||||| |||||||| ||| ||||| || | | Sbjct 240239 AGACATCATATGATAGGT-TCTAATGACAGAGTCAATGTCATCCTTATGGATTCCAACAG 240297 Query 112059 CGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA- 112117 | |||| ||| ||||||| ||| || | |||| || | || | || | || |||| Sbjct 240298 CAACCCTCATCAACATGTGCTGGGGTCTCTCCACGACCTTCCCCTGGACC--TTCAAGAG 240355 Query 112118 -TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||||||||||| | ||||||||| || | || |||| || Sbjct 240356 GTAAGACCTCTCAAGGGTTTTAAACCCAAAGTAATCATAGTCGAAGTCTCG 240406 >seq2214 Length=9977371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || || | |||||||| || || || ||||||||||| | || Sbjct 4795695 AACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--GC 4795752 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | || || | | ||| | ||||| |||||||||||||||||||| ||||| | Sbjct 4795753 CTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATGC 4795812 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || ||| | ||||| | ||| | ||||| || || || || | Sbjct 4795813 ACGGAGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCCCA 4795872 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | |||| ||| || || | | ||| | || || |||||| || | ||| || | Sbjct 4795873 CGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCCGG 4795932 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | || ||||| || |||||||| || || || || Sbjct 4795933 CAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGG 4795969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627895363788000