Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4399 152 6e-32 seq2214 95.1 1e-14 seq3953 82.4 9e-11 >seq4399 Length=3202280 Score = 152 bits (168), Expect = 6e-32 Identities = 358/528 (68%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 || ||||| |||| ||||||||||||||| |||||||| | || || ||||| ||||| Sbjct 383757 TACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCTTGCA-GC-GATATCAGCTCCA 383814 Query 129786 TAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAG 129843 | | || || ||||| | || | || || | | || |||| | || || Sbjct 383815 TCCAGTCGAAGGGGTTGGCCGCGTCGTACACCTTCCCG-CAGCCCAA-CGCCACCAGCAG 383872 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 || |||| ||| |||| ||||||| ||| ||| |||||| || | || Sbjct 383873 CCGGTCCGCCACGAACTCTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACCAGCGC 383932 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| | | ||| || |||| || ||||| || |||||||| || | Sbjct 383933 GCACGGCAGCGCGTCGCATACAAACTCCCTCTCGATCTCCACCGCGTCCCGCACTATCGA 383992 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAA 130020 | | ||||| || | || | | | || || || || || ||| || Sbjct 383993 CTTCACTTTCTCCTCGCTGAG-CT-TCGACCGGAGGAGGGAGTAGATCAGGCA-GGCGAA 384049 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| |||||||| | ||||| || || ||||||||| || || ||||| Sbjct 384050 GTCGCAGTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCAT 384109 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 || ||||||||||||| |||||| || ||||| || || ||||||||||||||||| Sbjct 384110 CAGCCCCCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCTC 384169 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTT 130200 ||| || || || |||| | | ||| || || || ||| || | ||||| Sbjct 384170 CACGCAGGCAAATGCAATCACCCTCTCCGCGAACGACTCGGA---GCCGTCGATCCACTG 384226 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||| ||||||| |||||| |||| | || |||||||||| |||||| Sbjct 384227 CATGGCCCACTCCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGC 384274 >seq2214 Length=9977371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||||||||| | ||| ||||| ||||| || || | ||||||||| | || Sbjct 4795695 AACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--GC 4795752 Query 14213 ATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | |||||| | | ||| | || || || ||||| ||||| |||||||| || | Sbjct 4795753 CTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATGC 4795812 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | || || ||| ||||| | ||| | || ||| || || || ||| Sbjct 4795813 ACGG-AGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCCC 4795871 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 || |||| ||| || || | | ||| | ||| || ||| || || || ||| || Sbjct 4795872 ACGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCCG 4795931 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | || ||||| || ||||||||||| || || ||| Sbjct 4795932 GCAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGGT 4795970 >seq3953 Length=3923179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 269/411 (65%), Gaps = 9/411 (2%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || || | | ||| ||| |||||||| ||||| || || || Sbjct 3433016 TCAAATCGGCCAGGCCGTAATAAGGCAGAGTCGAGGATATCGGCACGGTTAGTTGCAGCA 3432957 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| ||| || || | || || ||||||||||| |||||||| ||||| | Sbjct 3432956 ATAACAATGATACCAGTGTTTCCCTCGAATCCATCCATCTCTGTCAAGAGCTGATTAAGA 3432897 Query 14186 GTTTGTTCGCGTTCATCATT--CGCAGGC-ATACCACCCGCACTGCGTTGCTTACCGACG 14242 || || || | ||||||||| | | | | || ||| | | | |||| || || Sbjct 3432896 GTCTGCTCCCTTTCATCATTTCCTCCGCCAATTCCA---GTTCCCCTTTGCCGCCCAACA 3432840 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATA 14302 || ||||||||||| | || || || || || ||| || ||| | || | | Sbjct 3432839 GCATCAATTTCATCAACAAACACAATGCAAGGGGCATTCTCTTTGGCTTTCTTGAACAGA 3432780 Query 14303 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACAT 14362 || || ||||| ||||| ||||| ||||||||||| || || | | ||| | || Sbjct 3432779 TCACGAACTCTAGACGCACCAACACCAACAAACATCTCAACGAACTCAGAACCGG-AGAT 3432721 Query 14363 TG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 14421 | || || || || || |||||| || || || |||||| || || || || || Sbjct 3432720 GGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCGAGAAGAGTTTTTCCAGT 3432661 Query 14422 CCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGC 14471 || || || | ||||| |||| || || | |||||| ||||| Sbjct 3432660 TCCAGGAGGACCAACTAGAAGTACACCTTTAGGAATTCGGGCACCAACTGC 3432610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618300651691800