Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4399 122 1e-22 seq3953 109 6e-19 seq2214 91.5 2e-13 seq281 89.7 6e-13 seq2229 84.2 3e-11 >seq4399 Length=3202280 Score = 122 bits (134), Expect = 1e-22 Identities = 201/288 (70%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 94657 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 94716 |||| |||||| ||| | || | || || ||||| || |||||| | | || Sbjct 384340 GAGATGTACAGTCTGCTCCTCGAGACCTACATCAAGGACTCCGCCGAGAAGGACCGCCTG 384281 Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 || || ||| | || || || || | | ||||| ||||| ||||| ||| ||||| Sbjct 384280 TTCCGGGCGATCGAGACCGTCCCCTGCGTGAAGAAGAAGGCGGAGTGGGCCATGCAGTGG 384221 Query 94777 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 94836 | || | || || | || || ||| | | | |||||||| || || ||||| Sbjct 384220 ATCGA--CGGCTCCGAGT-CGTTCGCGGAGAGGGTGATTGCATTTGCCTGCGTGGAGGGG 384164 Query 94837 ATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCA 94896 ||||||||||| || |||||| || || | ||||| |||||||| || || ||||| Sbjct 384163 ATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCG 384104 Query 94897 GGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||| |||||| |||||||| ||||| | ||||||||||||||| Sbjct 384103 GGGCTCACCTTCTCGAACGAGCTGATCTCGAGGGACGAGGGACTCCAC 384056 >seq3953 Length=3923179 Score = 109 bits (120), Expect = 6e-19 Identities = 228/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 || |||||||| | || || || || || || |||| ||||| |||||| | | | Sbjct 3432986 TCGAGGATATCGGCACGGTTAGTTGCAGCAATAACAATGATACCAGTGTTTCCCT--CGA 3432929 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | ||||||||||||||||| || || |||| ||| || |||| ||||||||| || Sbjct 3432928 ATCCATCCATCTCTGTCAAGAGCTGATTAAGAGTCTGCTCCCTTTCATCATTTCCTCCGC 3432869 Query 9675 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 | |||| | | |||| || || |||||||| ||||||| || || ||||| | Sbjct 3432868 CAATTCCAGTTCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATGCAAG 3432809 Query 9735 GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 | ||| || || | || ||||| || || | || || |||||||||| Sbjct 3432808 GGGCATTCTCTTTGGCTTTCTTGAACAGATCACGAACTCTAGACGCACCAACACCAACAA 3432749 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 ||||||| || || | | ||| | || | || || || ||| || |||||| ||| Sbjct 3432748 ACATCTCAACGAACTCAGAACCGG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGCA 3432690 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || |||||||||||| || || || || || Sbjct 3432689 ATTGCCTTGGCGAGAAGAGTTTTTCCAGTTCCAGG 3432655 >seq2214 Length=9977371 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| || | || || ||||| || || |||| ||||||||| | || Sbjct 4795695 AACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--GC 4795752 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || || | | ||| ||||||| |||||||||||||||||||| || |||| Sbjct 4795753 CTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATGC 4795812 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || |||| | || ||||| | ||||| || | | || || || || Sbjct 4795813 ACGG--AGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCC 4795870 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 || |||| ||| || || | | ||| | ||| || ||| || || || ||| || Sbjct 4795871 CACGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCC 4795930 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| || ||||| ||||| ||||| || || || || Sbjct 4795931 GGCAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGG 4795969 >seq281 Length=1258992 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 104196 |||||| ||||| || ||| ||||| | ||||||||||||| | || |||| || Sbjct 240405 GAGACTTCGACTATGATTACTTTGGGTTTAAAACCCTTGAGAGGTCTTACCTCTTGAA-- 240348 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || | || | |||| | || ||| ||||||| ||| | || || | || || Sbjct 240347 GGTCCAGGGGAAGGTCGTGGAGAGACCCCAGCACATGTTGATGAGGGTTGCTGTTGGAAT 240288 Query 104257 TCATGGGGAAGACATTGATTCTGTC-TTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 ||| ||| |||||||| |||||| || || || || | | |||||| || | || Sbjct 240287 CCATAAGGATGACATTGACTCTGTCATTAGA-ACCTATCATATGATGTCTCAGCGGTGGT 240229 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 ||| ||| ||| | || || ||||| ||||| || ||||| || ||||| Sbjct 240228 TCACTCATGCATCTCCTACGCTCTTTAATGCAGGAACACCGAGGCCCCA 240180 >seq2229 Length=2552774 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 || || || ||| |||||||||||||||| ||| ||| ||||||||||||||||| ||| Sbjct 51659 AACTATCGAGAGGCTTACGGACTGTTTGCATGCAACGGGATCCTCTTCAACCATGAGTCA 51600 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC 7459 || | ||||| | ||||||| || |||||| ||| Sbjct 51599 CCTCGTCGAGGCGAGAACTTTGTGACCCGGAAGATAACC 51561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583133904322200