Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4399 221 1e-52 seq2495 102 9e-17 >seq4399 Length=3202280 Score = 221 bits (244), Expect = 1e-52 Identities = 576/858 (67%), Gaps = 24/858 (3%) Strand=Plus/Minus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 ||| || || |||||| |||| ||||| ||| | || |||||| | | ||||| Sbjct 384602 GTATCCCGAGGTGTGGGAAATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCGGAGGA 384543 Query 59633 GATTGACCTCGCC--GGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCAT 59690 | | |||||| || ||| ||| | | ||||| || || | | || ||||| ||| Sbjct 384542 GGTGGACCTCTCCCAGGACACCCGCC--ACTGGGAGAATCTAACCTCCGGCGAGCGCCAT 384485 Query 59691 TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATA 59750 ||| ||| |||| || |||||||| || ||| || || || | || || | Sbjct 384484 TTCGTCACCCATATCCTCGCTTTCTTCGCCGCCTCTGACGGGATCGTCCTCGAGAACCTC 384425 Query 59751 GACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC 59808 | | | | ||| ||||| |||||||| |||||||||| | ||||| | | | Sbjct 384424 GCC--GCCCGGTTCATGAAGGAGGTCCAGATCTCCGAGGCCCGCGCCTTCTATGGCTTCC 384367 Query 59809 AG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTC 59867 || ||| || ||| ||||||||||||| |||| || | |||| | | || Sbjct 384366 AGATCGC-CATTGAGAACATCCACTCCGAGATGTACAGTCTGCTCCTCGAGACCTACATC 384308 Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAA 59926 ||||| | | ||||||| | |||||||| || || ||||| |||||| || || || Sbjct 384307 AAGGACTCCGCCGAGAAGGACCGCCTGTTCCGGGCGATCGAGACCGTCCCCTGC-GTGAA 384249 Query 59927 ACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGT 59984 | || || || ||||||||||||||||| || || ||| || || || | | Sbjct 384248 GAAGAAGGCGGAGTGGGCCATGCAGTGGATCGACGGCTCCGAG--TCGTTCGCGGAGAGG 384191 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 | || || ||||| |||||||| || ||||||||||| || |||||||| || ||| Sbjct 384190 GTGATTGCATTTGCCTGCGTGGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTC 384131 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| || || Sbjct 384130 TGGCTGAAGAAGCGGGGGCTGATGCCGGGGCTCACCTTCTCGAACGAGCTGATCTCGAGG 384071 Query 60105 GACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATG 60163 |||||||| ||||| || || || || | | |||| || | ||| | || | Sbjct 384070 GACGAGGGACTCCACTGCGACTTCGC-CTGCCTGATCTACTCCCTCCTCCGGTCGAA--G 384014 Query 60164 CCCTTCCA--AGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTT 60220 | | | | || | | | ||| || | | || ||| || | ||||| ||||| Sbjct 384013 CTCAGCGAGGAGAAAGTGAAGTCGATAGTGCGGGACGC-GGTGGAGATCGAGAGGGAGTT 383955 Query 60221 CATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTA 60280 | || ||||| || ||| || | || ||| ||| | ||| |||||| Sbjct 383954 TGTATGCGACGCGCTGCCGTGCGCGCTGGTGGGGATGAACGGCGACCTCATGGGGCAGTA 383895 Query 60281 CATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGT 60340 ||| |||| || |||||||| || ||| ||| || || | |||| || Sbjct 383894 CATAGAGTTCGTGGCGGACCGGCTGCTGGTGGCGTTGGGCTGCGGGAAGGTGTACGACGC 383835 Query 60341 GAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGA 60400 | ||||| ||||||||||||||| || ||| || ||||||||||||||||||| || Sbjct 383834 GGCCAACCCCTTCGACTGGATGGAGCTGATATCGCTGCAAGGGAAGACCAACTTCTTCGA 383775 Query 60401 GAAGCGGGTCGGGGATTA 60418 |||| |||||||||| || Sbjct 383774 GAAGAGGGTCGGGGAGTA 383757 >seq2495 Length=1658871 Score = 102 bits (112), Expect = 9e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||||| |||||||||||||||||| | || || ||||||||||| | ||||| || Sbjct 1091895 TTCTGTGCCATTTTCTGGCTCAAAAAGAGGGGACTGATGCCGGGCCTAACATTCTCAAAT 1091954 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| ||||| ||||||||||| Sbjct 1091955 GAGCTTATTTCTCGGGATGAGGGCCTCCA 1091983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548405461573200