Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4399 138 1e-27 seq3224 91.5 2e-13 seq6319 82.4 8e-11 seq4939 82.4 8e-11 >seq4399 Length=3202280 Score = 138 bits (152), Expect = 1e-27 Identities = 568/873 (65%), Gaps = 32/873 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||| ||| || || |||||||||||||||| || ||| || ||||||| Sbjct 383757 TACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCTTGCAGCGATATCAGCTCCATC 383816 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC---CAAACTGTGCCATGAGG 74579 |||||||| ||||| || |||| | |||| | | | ||| ||| || Sbjct 383817 CAGTCGAAGGGGTTGGCCGCGTCGTACAC---CTTCCCGCAGCCCAACGCCACCAGCAGC 383873 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || |||||||| || | ||||||||| ||| | | | ||| || | || | Sbjct 383874 CGGTCCGCCACGAACTCTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACCAGCGCG 383933 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 |||||||| || ||| | |||||| ||||| | ||| || | || ||| Sbjct 383934 CACGGCAGCGCGTCGCATACAAACTCCCTCTCGATCTCCACCGCGTCCCGCACTATCGAC 383993 Query 74700 TGAA-TGTCTT-TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAAC 74756 | | | ||| | | | || || || ||| | ||||| | | | || ||| || Sbjct 383994 TTCACTTTCTCCTCGCTGAGC--TTCGACCGGAGGAGGGAGTAGATCAGGCA-GGCGAAG 384050 Query 74757 TCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || || ||| || || || || |||| || ||||| || | || || ||||| Sbjct 384051 TCGCAGTG-GAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCAT 384109 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || |||||||||| ||| ||||||||||||||| || ||||||||| || || Sbjct 384110 CAGCCCCCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCTC 384169 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AGTC-ATCCAAGT 74932 || || ||||| || | | | | ||||||| | ||||| ||| ||||| Sbjct 384170 CACGCAGGCAAATGCAATCACCCTCTCCGCGAAC---GACTCGGAGCCGTCGATCCACTG 384226 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGC 74991 | ||||| || || ||| | | |||| ||||| || |||||||| |||| |||| Sbjct 384227 CATGGCCCACTCCGC-CTTCTTCTTCACGCAGGGGACGGTCTCGATCGCCCGGAACAGGC 384285 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 ||||||| ||| ||||||| | | || | | || |||| |||| || | Sbjct 384286 GGTCCTTCTCGGCGGAGTCCTTGATGTAGGTCTCGAGGAGCAGACTGTACATCTCGGAGT 384345 Query 75052 GAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 | || ||| || ||| |||| | | ||||| | || ||||| | ||||| || Sbjct 384346 GGATGTTCTCAATG-GCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGAGATCTGGACC 384404 Query 75111 TCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 ||||| |||| | | ||| ||||| | |||||| ||||| ||||||||||| | Sbjct 384405 TCCTTCATGAACCGGGC--GGCGAGGTTCTCGAGGACGATCCCGTCAGAGGCGGCGAAGA 384462 Query 75169 AAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCA 75228 |||| || | ||| || |||||||| || || || || ||||| | | Sbjct 384463 AAGCGAGGATATGGGTGACGAAATGGCGCTCGCCGGAGGTTAGATTCTCCCAGT--GGCG 384520 Query 75229 GGTCCCCCGCCAAA--TCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTA 75286 ||| || | | | || | |||||| |||||||||| | |||||| ||||| Sbjct 384521 GGTGTCCTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTA 384580 Query 75287 CAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 || ||||| || || || |||||||| || Sbjct 384581 CATTTCCCACACCTCGGGATACTTGATTGGGAA 384613 >seq3224 Length=4215183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1328565 CTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1328506 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1328505 CTGAGCTACGAAAGC 1328491 >seq6319 Length=5966559 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4200415 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4200474 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 4200475 TGAGCTATGAAAGCA 4200489 >seq4939 Length=4123586 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 802943 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 803002 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 803003 CTGAGCTACGAGAGC 803017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547096946319000