Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5369 120 3e-22 seq2011 113 4e-20 seq790 102 7e-17 seq2370 96.9 3e-15 seq1810 89.7 4e-13 seq1932 87.8 2e-12 >seq5369 Length=1591519 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | || || || || || || || Sbjct 1427232 CATGCAGATCTTTGTTAAGACCCTGACAGGGAAGACAATCACCCTGGAGGTTGAGAGCTC 1427173 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| |||||||| ||||| || || || ||||| || || Sbjct 1427172 GGACACCATTGACAATGTCAAGGCGAAAATTCAGGACAAGGAGGGGATCCCACCGGACCA 1427113 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||||| || | || || || |||| || |||| ||||| Sbjct 1427112 GCAGAGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACCCTTGCCGACTACAA 1427053 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | || |||| | |||||| | || ||||| Sbjct 1427052 CATTCAAAAGGAGTCCACTCTTCACCTGGTCCTCCGTTTGAGAGGAGGCAT 1427002 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||| ||| | || ||| | || || || || Sbjct 1427004 CATGCAGATCTTCGTCAAGACCCTGACCGGGAAGACGATCACTTTGGAGGTTGAGAGCTC 1426945 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || |||||||| ||||| || || || || || || || Sbjct 1426944 AGACACTATTGACAATGTTAAGGCGAAAATTCAGGACAAGGAGGGTATTCCCCCGGACCA 1426885 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | || || | ||| || | || ||||| Sbjct 1426884 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTTGAGGATGGGAGAACCCTTGCTGACTACAA 1426825 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||||||| | || ||||| | ||| | |||||||||| Sbjct 1426824 CATTCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTTAGGGGTGGCAT 1426774 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || ||||| ||| | || || || || || || || Sbjct 1427688 CATGCAAATTTTTGTGAAGACCCTCACCGGTAAGACCATCACGCTCGAGGTAGAGAGCTC 1427629 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || ||||||||||| ||||| || || || || || Sbjct 1427628 TGATACAATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCGGACCA 1427569 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || ||| | || ||| | || || | || || || Sbjct 1427568 GCAGAGGTTGATTTTTGCTGGGAAGCAACTCGAGGACGGAAGAACTCTTGCTGACTATAA 1427509 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || ||||| | ||| ||||||| || || Sbjct 1427508 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTGCGGGGAGGAAT 1427458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| || ||| | || || | || || || || Sbjct 1426776 CATGCAAATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCTTGGAGGTCGAGAGTTC 1426717 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| ||| ||||| ||||| || ||||| || || ||||| Sbjct 1426716 TGATACCATCGATAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 1426657 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || || ||| | ||||| || ||| || | || || || Sbjct 1426656 GCAGAGGCTGATCTTCGCTGGGAAGCAACTTGAAGATGGTCGCACCCTTGCAGACTATAA 1426597 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | || | ||| | || ||||| Sbjct 1426596 CATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 1426549 >seq2011 Length=5003947 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || ||||| ||||| || || Sbjct 3037586 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAAGTCGAGAGTTCG 3037527 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || ||||| || |||||||| || || || || Sbjct 3037526 GACACGATCGACAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCGGACCAG 3037467 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || || ||||| ||| | ||| | ||||||||||| Sbjct 3037466 CAGAGGCTGATCTTCGCCGGGAAGCAGTTGGAGGACGGCCGCACCCTAGCCGATTACAAC 3037407 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 3037406 ATCCAGAAGGAGTCGAC 3037390 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || || | || || || ||| Sbjct 3037358 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACGTTGGAGGTCGAGAGCTCC 3037299 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || ||||| || |||||||| || || || || Sbjct 3037298 GACACGATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCGCCGGACCAG 3037239 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || ||||| ||| | ||| | ||||||||||| Sbjct 3037238 CAGAGGCTGATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACCCTAGCCGATTACAAC 3037179 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || | ||| | ||| | || ||||| || Sbjct 3037178 ATTCAGAAGGAGTCGACGCTCCACCTCGTTCTCCGTCTCCGTGGTGGTAT 3037129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||||||| | || || | || || || || Sbjct 3037130 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACGATCACGTTGGAGGTCGAGAGCTCT 3037071 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || |||||||| || || || || || || ||||| Sbjct 3037070 GACACGATTGACAACGTGAAGGCCAAGATTCAAGATAAGGAGGGTATTCCTCCGGATCAG 3037011 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| || || | || || | |||| | | ||||| || Sbjct 3037010 CAGCGGCTGATCTTTGCCGGAAAGCAGCTCGATGATGGCAGGACCCTGGCGGATTATAAT 3036951 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | |||||||| Sbjct 3036950 ATCCAGAAGGAGTCGACCCTGCATTTGGT 3036922 >seq790 Length=1848252 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | || || ||||| || || || Sbjct 1588001 CATGCAGATCTTTGTCAAGACCCTGACTGGGAAGACGATCACCCTTGAGGTCGAGAGCTC 1588060 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || |||||||| ||||| || || || || || || || Sbjct 1588061 GGACACCATTGACAATGTTAAGGCGAAAATTCAGGACAAGGAGGGTATTCCCCCAGACCA 1588120 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | || || | ||| || | || ||||| Sbjct 1588121 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTTGAGGATGGGAGAACCCTTGCTGACTACAA 1588180 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || ||||| | ||| || |||||||||| Sbjct 1588181 CATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGAGGGGTGGCAT 1588231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| |||| || ||| | || || | || || || || Sbjct 1588229 CATGCAGATTTTTGTGAAAACCTTGACTGGGAAGACCATCACCTTGGAGGTCGAGAGTTC 1588288 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | |||||| ||| ||||| ||||| || || || || || ||||| Sbjct 1588289 TGATACCATCGATAATGTCAAAGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCA 1588348 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || ||| | ||||| || || || | || || || Sbjct 1588349 GCAGAGGCTGATCTTTGCTGGGAAGCAACTTGAAGATGGTCGCACTCTTGCGGACTATAA 1588408 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||||||| | || | || | ||| | || ||||| Sbjct 1588409 CATCCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTCCGTGGTGG 1588456 >seq2370 Length=1017971 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| |||| Sbjct 237399 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCGTCG 237458 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || || || || || || || Sbjct 237459 GACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCGGACCAG 237518 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || ||| | || ||| | ||| | | ||||||||| Sbjct 237519 CAGCGCCTGATCTTCGCCGGGAAGCAACTCGAGGACGGCCGCACCCTCGCTGATTACAAC 237578 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 237579 ATCCAGAAGGAGTCCACC 237596 >seq1810 Length=4673341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | ||||| | || || ||| || Sbjct 4157648 ATGCAGATTTTCGTGAAGACCCTTACTGGCAAGACCATTACCTTGGAGGTCGAAAGCTCG 4157589 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || ||||| || || || ||||| || || || || || Sbjct 4157588 GACACGATTGATAATGTGAAGACCAAAATCCAGGATAAGGAAGGGATTCCCCCGGACCAG 4157529 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| || || || || |||| || | |||| || | ||||||||| Sbjct 4157528 CAGAGGCTCATATTTGCTGGGAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTACAAC 4157469 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| ||||| || ||| | || || || Sbjct 4157468 ATTCAGAAGGAATCCACCCTCCACTTAGT 4157440 >seq1932 Length=4064500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||| ||| | || || || || ||||| || Sbjct 3414579 CATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTC 3414520 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| ||| || || ||||| || || || || || || || Sbjct 3414519 CGACACGATCGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCA 3414460 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||| || || | || || | || || | || ||||| Sbjct 3414459 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAA 3414400 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | || | ||| | || ||||| Sbjct 3414399 CATCCAGAAGGAGTCGACCCTTCACCTTGTGCTCCGTCTCCGTGGTGG 3414352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || || || || ||||| ||| Sbjct 3414806 ATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACGCTCGAGGTGGAGAGCTCC 3414747 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || ||||| |||||||| || || || || Sbjct 3414746 GACACGATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 3414687 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| |||||| || || | || || | || | | || || ||| Sbjct 3414686 CAGAGGCTGATATTCGCCGGGAAGCAGCTCGAGGATGGCCGCACACTCGCGGACTATAAC 3414627 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||||||| Sbjct 3414626 ATCCAGAAGGAGTCGACC 3414609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434823778065600