Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq949 145 1e-29 seq4293 125 9e-24 seq2507 125 9e-24 seq3240 113 6e-20 seq4609 105 8e-18 seq5379 102 1e-16 seq1090 102 1e-16 seq2011 98.7 1e-15 seq299 96.9 4e-15 seq4399 89.7 6e-13 seq4939 87.8 2e-12 seq2214 86.0 8e-12 seq5880 82.4 1e-10 >seq949 Length=1679 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 186544 TATTGCACTTGGATTACATACTACAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAG 186603 |||| | || || |||||||| || || || ||| |||| || ||||| ||||| || | Sbjct 1514 TATTTCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGACGCACG 1455 Query 186604 AGGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCC 186663 ||||| ||| | || |||||||| |||||||| || ||| || |||||||||||||| Sbjct 1454 TGGTTCCAAATTAATGCCAGATAAAAAAGATTTCGGTTATAGTTTTCCTTGTGATGGTCC 1395 Query 186664 AGGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTG 186723 || |||| ||||||||||||| ||| | |||||| || || ||| | | || ||||| Sbjct 1394 GGGACGAGGCGGTACTTGTGATATTTCCGCTTGGGACGCATTTTATTTGGCAGTTTTCTG 1335 Query 186724 GGCATTCAATACAATAGCATGGG 186746 | || ||||| || | ||||| Sbjct 1334 GATGTTAAATACCATTGGATGGG 1312 >seq4293 Length=5823730 Score = 125 bits (138), Expect = 9e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 190502 AACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCACAAGGTAAAATTGTTCCA 190561 ||| ||||||||||||| || ||||| | |||||||||| |||||| | | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 190562 ACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAAAGAAAT 190621 || |||| ||| |||||||| | || ||||||||||||||||| ||||||||| | ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 190622 GCACACAACTTCCCACTAGACCTAGCT 190648 || || |||||||| |||||||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCT 2155110 >seq2507 Length=3123735 Score = 125 bits (138), Expect = 9e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 191633 GTAGGTCTTGCACTTAACTTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCA 191692 || ||||| || || ||| || | || ||||| || || || || ||||| | ||||| Sbjct 2652290 GTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCG 2652231 Query 191693 GAAGACCCAGAGTTTGAAACCTTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGA 191752 ||||| || || |||||||| ||||| || || || ||||| | || |||||||| | Sbjct 2652230 GAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGT 2652171 Query 191753 GCATGGATGTCTTCAGTAGACCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTA 191812 || |||||| | | ||| || |||||||| ||| || | ||||||||||| |||||| Sbjct 2652170 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTA 2652111 Query 191813 CCTAGAGGAAATGCATTGTAAT 191834 || | ||||| || | |||| Sbjct 2652110 CCCCGTGGAAACGCTCTTTAAT 2652089 >seq3240 Length=2626545 Score = 113 bits (124), Expect = 6e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 190481 GGTATTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGAT 190540 ||||| |||| ||||| |||||| ||||||||||||| || ||||| |||||||||||| Sbjct 808456 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 808515 Query 190541 GCACAAGGTAAAATTGTTCCAACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATG 190600 |||||| | || || |||| ||| || ||||| | || |||||||||||| Sbjct 808516 AGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATG 808575 Query 190601 GAAGTAATGCATGAA 190615 ||||| ||||||||| Sbjct 808576 GAAGTTATGCATGAA 808590 >seq4609 Length=2952995 Score = 105 bits (116), Expect = 8e-18 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 185072 AGTCATGACAATATGACAGAAGAGAAGT-TATATCAAAAATTATTTGCTACACACTTTGG 185130 |||||||| |||| ||||| || | || | ||||| || | |||||| | || ||||| Sbjct 520840 AGTCATGATGATATTACAGAGGA-ACGTCTTTATCATAATATTTTTGCTTCTCATTTTGG 520782 Query 185131 TCATCTTGCAATTATCTTTCTATGGGTTGCAGGTAATTTAATTCATATAGCATGGCAAGG 185190 || | ||||| || ||||| ||| | | | ||| | ||| |||||| |||||||| Sbjct 520781 GCAATTAGCAATAATTTTTCTGTGGACTTCCGAAAATCTCTTTCCTATAGCTTGGCAAGG 520722 Query 185191 TAACTTTGAACAGTTTGTAGCAGACCCACA--ACATGTGATACCTATAGCACATAGAATA 185248 || ||||| || ||| ||||| | |||||| | |||||| || ||| ||| Sbjct 520721 AAATTTTGAGGCGTGGGTACAGGACCCTCTTTACATGTAAGACCTATTGCTCATGCAATT 520662 Query 185249 TGGGATCCTCATTTTGGTCAA 185269 |||||||||||||||| |||| Sbjct 520661 TGGGATCCTCATTTTGATCAA 520641 >seq5379 Length=1164929 Score = 102 bits (112), Expect = 1e-16 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 186511 AATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAAC 186570 |||||| || ||||| || ||||||||||| ||||| || | |||||||| | || Sbjct 306099 AATAGGTTCTTGAGATTTTTTGGTTCATCATGCGATTGCTCTAGATTTACATACAATTAC 306040 Query 186571 TTTAATCCTAGT-CAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGA-TAAG 186628 || ||| |||| || |||| ||||| || | | ||| ||| | || ||||| ||| Sbjct 306039 ATTGATCTTAGTAAAAAGGTGTTTTAGACGCACGTGATTCCAAATTAATGCCAGATTAAA 305980 Query 186629 AAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGT-GGTACTTGTGATAG 186687 ||| | | || ||| || ||| ||||||||| ||| ||| || ||||||||||||| Sbjct 305979 AAATAAATCGGTTATAGTTTTCCTCGTGATGGTCAAGG-AGAAGTCGGTACTTGTGATAT 305921 Query 186688 TTCTGGTTGGGA 186699 ||| | |||||| Sbjct 305920 TTCCGCTTGGGA 305909 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 186511 AATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAAC 186570 |||||| ||| ||||| || ||||||||||||||||| | | |||||||||| | || Sbjct 315262 AATAGGTTCTGGAGATTTTTTGGTTCATCATGCTATTGCTC-TAGATTACATACAATTAC 315204 Query 186571 TTTAATCCTAGT-CAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGA 186629 || ||| ||| ||| ||||| ||||| || | |||| ||| | || | | |||| | Sbjct 315203 ATTGATCTAAGTACAAAGGTGCTTTAGACGCACGTGGTTTCAAATTAATGCAAAATAAAA 315144 Query 186630 AAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTT 186689 || | | | ||| || |||||||||| |||| ||| |||||| ||||| || Sbjct 315143 AAAAAATCGATTATAACTTTTATTGTGATGGTTCAGGACAAGGCAGTACTTATGATATTT 315084 Query 186690 CTGGTTGGGA 186699 | |||||| Sbjct 315083 CCTTTTGGGA 315074 >seq1090 Length=2729200 Score = 102 bits (112), Expect = 1e-16 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 186203 AGAATGCTACAGCACAAAGAAGCAATTATAAGTCACTTAAGTTGGGT-ATCACTATTCCT 186261 |||||| || | || |||||||| || ||| || ||||||||||| | || | || || Sbjct 680652 AGAATGTTAGACCATAAAGAAGCTATCATATCCCAGTTAAGTTGGGTCAGCA-TCTTTCT 680594 Query 186262 TGGATTCCATACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCC 186321 | ||||||||||| ||| | | ||| ||||||||||| | | || ||| || ||| Sbjct 680593 GAGTTTCCATACTTTGGGACTTTTTGTTCATAATGATGTCATGCTTGCTTTTAGTACTCC 680534 Query 186322 TGAGAGACAGATATTAATTGAACCTATATTTGCACAGTGGATACA 186366 |||| ||| || || || |||||||||||| || |||||||| Sbjct 680533 GGAGAAACAAATCTTGATCCAACCTATATTTGTCCAATGGATACA 680489 >seq2011 Length=5003947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 186605 GGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCA 186664 ||||| ||| | || |||||||| |||||||| || ||| || |||||||||||||| Sbjct 607317 GGTTCCAAATTAATGCCAGATAAAAAAGATTTCGGTTATAGTTTTCCTTGTGATGGTCCG 607376 Query 186665 GGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGG 186724 | || | ||||||||||||| ||| | ||||||||| || ||| | | || |||||| Sbjct 607377 CGATGATGCGGTACTTGTGATATTTCCGCTTGGGATGCATTTTATTTGGCAGTTTTCTGG 607436 Query 186725 GCATTCAATACAATAGCATGGG 186746 || ||||| || | || || Sbjct 607437 ATGTTAAATACCATTGGATTGG 607458 >seq299 Length=2708229 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 182922 GTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTGCTCATCTAGGTATCA 182981 ||||| || | |||| || ||||| ||||| ||| || || | || | || | Sbjct 1475643 GTGATTTGGAGGAGATCTCCCGAAAAGTATTTAGTGCCCATTTCGGGCAACATTCCATTA 1475702 Query 182982 TCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTTCAAACTATACAGGAT 183041 | ||| | ||| |||| | | | || || |||||| | ||||| || ||| || || Sbjct 1475703 TTTTTCTTTGGCTGAGTGGCATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCAT 1475762 Query 183042 GGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTTGGCCTATACTTGGTC 183101 || | ||||| ||||| | |||| ||||||| ||||||||||| ||| | || | Sbjct 1475763 GGCTAAGTGACCCTACTCACATTGGACCTAGTGCTCAGGTGGTTTGGCCAATAGTGGGCC 1475822 Query 183102 AAGAGATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTAGAATTACATCTGGTT 183161 |||| ||||||||||| ||| ||| | || | | ||| || ||| || ||||||| Sbjct 1475823 AAGAAATATTGAATGGCGATGTGGGCGGGGGTTTCCGAGGAATACAAATAACCTCTGGTT 1475882 Query 183162 TATTTCAG 183169 | | |||| Sbjct 1475883 TTTATCAG 1475890 >seq4399 Length=3202280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 190562 ACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAAAGAAAT 190621 || |||| ||| || ||||| | | ||||||||||||||||| ||||||||| | ||| Sbjct 214271 ACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 214212 Query 190622 GCACACAACTTCCCACTAGACCTAGCT 190648 || || |||||||| |||||||||||| Sbjct 214211 GCTCATAACTTCCCTCTAGACCTAGCT 214185 >seq4939 Length=4123586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 186915 GGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTCCTTATTT 186974 |||| ||||||||||| ||||| ||| | |||| || || | |||||||||| | |||| Sbjct 3461492 GGGCGTGGATGTTCTTATTTGGACATCTTGTTTAGGTTACCGAATTTATGTTCTTAATTT 3461551 Query 186975 CTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAA 187027 | || | || |||||||| || || ||||| ||| | || ||||| ||| || Sbjct 3461552 CCCGGCGTGGATATTGGCAGGAATTGATTGAAACTTTAGCATGGGCTCATGAA 3461604 >seq2214 Length=9977371 Score = 86.0 bits (94), Expect = 8e-12 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 188634 AAGACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGG 188693 || || ||| || |||| |||||| ||||||||||||| || || | || | | | Sbjct 4444010 AATACTTGTAACTATTCAATATCCTCATGAAAAATTAATTAAATCGGA-ACATTTCTATG 4443952 Query 188694 GAGG-ATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTC 188752 | || || | ||| ||||||||||| |||||||||||||||||| | | || |||| Sbjct 4443951 CCCGTATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTATTCGTGTATGTC 4443892 Query 188753 CTATTAATTTACCTGTAGTTGATTGGGTAATGAATAAACAAACTAAGAAGAAGGAACTTA 188812 |||| || | | | ||||||||| | |||| | || | ||||| | | Sbjct 4443891 CTATAGATCTCTCAATTGTTGATTGGAAATTGAAAACTGGAATTCGAAAGAAACGATTGC 4443832 Query 188813 GAAATTATTCAATTGACTTTGGTGCTTGCATTTTCTGTGGGAATTGTGTAGAATACTGTC 188872 ||||| ||||| ||||| ||| || | ||||| || || || || || |||| Sbjct 4443831 TTAATTACAATATTGATTTTGGAATTTGTATATCTTGTGGTAACTGCGTTGAGTATTGTC 4443772 Query 188873 CAACTAACTGTCTATCCAT 188891 |||| || | | |||| || Sbjct 4443771 CAACAAATTATTTATCAAT 4443753 >seq5880 Length=2495201 Score = 82.4 bits (90), Expect = 1e-10 Identities = 210/314 (67%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 185753 GGTTTCCATCCACAAACAGAGGCATTATGGTTGACTGATATAGCACATCATCACCTTGCA 185812 || ||||||| | |||| | |||| ||||||| |||| | |||||||| | || Sbjct 2180024 GGATTCCATCTAGAAACGCAAAGTTTATAGTTGACTAATATTGTTCATCATCATTTGGCT 2179965 Query 185813 ATAGGAGTAATATTCATTATTGCAGGTCATATGTATAGAAGTGCTTGGGGTATTGGTCAC 185872 || | | | || || | | || | |||||| ||||||| | | | ||||| ||| Sbjct 2179964 ATTGCATTTATTTTTCTCACTGTTGTTCATATTTATAGAACTAACTTTGACATTGGGCAC 2179905 Query 185873 TCAATGAAGGAGATACTT--GAAGCACATACACCACCAAGAGGAGGACTAGGTGCA-GGT 185929 ||| | |||| || |||||| ||| || || || ||||| | || ||| || Sbjct 2179904 --AATACAAAAGATCTTTTAGAAGCATATATTCCTCCCAGGCGAGGATT-GGAGCATGGA 2179848 Query 185930 CATAAAGGATTATATGAAACAGTTACAGACTCATTACACCTACAGTTAGGTCTTGCACTT 185989 |||||||| | ||||| ||| | | | ||| | || | || || || ||||| || Sbjct 2179847 CATAAAGGTCTTTATGACACAATCAATAATTCAATTCATTTTCAATTTGGCCTTGCTCTA 2179788 Query 185990 GCATCTCTAGGTGTTGTTACTAGTCTGGTGGCACAACATATGTACTCAATGCCATCCTAT 186049 | ||| |||| ||| ||||| |||| || |||| | |||||| | || | ||| Sbjct 2179787 ACCTCTTTAGGCGTTATTACTTCCTTGGTAGCTCAACGT--GTACTCTTTACCCGCTTAT 2179730 Query 186050 GCTTTCATAGCACA 186063 | ||||||||||| Sbjct 2179729 GGGTTCATAGCACA 2179716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631289825119800