Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5369 107 2e-18 seq3224 98.7 9e-16 seq2214 98.7 9e-16 seq1932 89.7 4e-13 seq2370 87.8 2e-12 seq6319 84.2 2e-11 >seq5369 Length=1591519 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| || || | |||| || || ||| ||| ||||| || || || || Sbjct 1427001 CATGCCTCCTCTCAAACGGAGGACCAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTC 1427060 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| || | | || |||||||| ||||| ||||| ||||| | ||||||||| || Sbjct 1427061 GGCAAGGGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGG 1427120 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA-- 39230 |||| | | ||| |||||| |||||| |||| | | | || || ||| Sbjct 1427121 TGGGATCCC-CTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTGTC---CGAGC 1427176 Query 39231 -CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| ||||| | || || ||||| || ||||||||||| ||||| Sbjct 1427177 TCTCAACCTCCAGGGTGATTGTCTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 1427231 >seq3224 Length=4215183 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||||| ||||| || |||| || ||||| Sbjct 2572735 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCCAGCTGC 2572794 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||||||||| | ||| | | ||| |||||| ||| ||| Sbjct 2572795 TTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTC 2572854 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | || ||||| ||||| || || | || || | || ||||| Sbjct 2572855 GCCTTCACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTTATCGTCTTCCCCGTG 2572914 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTT 39288 || || || || ||||| ||||||||| Sbjct 2572915 AGGGTCTTCACGAAGATCTGCATCTTT 2572941 >seq2214 Length=9977371 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||||| ||||| || |||| || ||||| Sbjct 6800423 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCCAGCTGC 6800482 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||||||||| | ||| | | ||| |||||| ||| ||| Sbjct 6800483 TTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTC 6800542 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | || ||||| ||||| || || | || || | || ||||| Sbjct 6800543 GCCTTCACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTTATCGTCTTCCCCGTG 6800602 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTT 39288 || || || || ||||| ||||||||| Sbjct 6800603 AGGGTCTTCACGAAGATCTGCATCTTT 6800629 >seq1932 Length=4064500 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || ||||| ||||| || || || |||| || ||||| || || || || Sbjct 3415071 CTCCTTCTGGATGTTATAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAA 3415130 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| ||||||||||| | || | | ||| |||||| ||| ||| |||| | Sbjct 3415131 GATAAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 3415190 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||| ||| ||| || || | ||||||| | || || || || ||||| || Sbjct 3415191 ATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATAGTCTTGCCGGTGAGGGTTTTCAC 3415250 Query 39273 AAAGATTTGCATCT 39286 ||||| ||||||| Sbjct 3415251 GAAGATCTGCATCT 3415264 >seq2370 Length=1017971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || ||||| || || || || |||| || || || Sbjct 237601 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCCTCGAGTTGC 237542 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | | ||| |||||| ||| || Sbjct 237541 TTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTA 237482 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || ||||||||| || | ||||| | || ||||| Sbjct 237481 GCCTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 237423 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| || || || ||||| |||||||| Sbjct 237422 CAGGGTCTTCACGAAGATCTGCATCTT 237396 >seq6319 Length=5966559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || || ||||| || || || |||| ||| Sbjct 2708869 ACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCA 2708810 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || || ||||||||||| | || | || ||| || ||| | Sbjct 2708809 AGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGG 2708750 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | | | | ||| ||||| ||||| || || | || || | || Sbjct 2708749 ATCTTGGCCTTCACATTGTCGATCGTGTCGCTGGACTCGACCTCGAGGGTTATCGTCTTC 2708690 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || || || || ||||| ||||||| Sbjct 2708689 CCCGTTAGGGTCTTCACGAAGATCTGCATCT 2708659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429454483310765