Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3224 113 3e-20 seq2214 113 3e-20 seq2370 104 2e-17 seq1810 100 2e-16 seq5369 93.3 3e-14 seq790 93.3 3e-14 seq4810 86.0 4e-12 seq2011 86.0 4e-12 >seq3224 Length=4215183 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || ||||| || ||||| ||||| ||| Sbjct 2572940 AAGATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATAACCCTCGAGGTTGAGTCC 2572881 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || || || Sbjct 2572880 AGCGACACCATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGGATCCCCCCGGA 2572822 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || ||||||||||| || ||||| |||| ||||| | | ||| || Sbjct 2572821 CCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACACTCGCCGACTA 2572762 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 2572761 CAACATCCAGAAGGAGTCGAC 2572741 >seq2214 Length=9977371 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || ||||| || ||||| ||||| ||| Sbjct 6800628 AAGATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATAACCCTCGAGGTTGAGTCC 6800569 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || || || Sbjct 6800568 AGCGACACCATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGGATCCCCCCGGA 6800510 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || ||||||||||| || ||||| |||| ||||| | | ||| || Sbjct 6800509 CCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACACTCGCCGACTA 6800450 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 6800449 CAACATCCAGAAGGAGTCGAC 6800429 >seq2370 Length=1017971 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || |||||||| ||||| || || || Sbjct 237396 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCG 237455 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || || | ||||| || Sbjct 237456 TCGGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCGGAC 237515 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || ||||| || |||| ||||| | | |||||| Sbjct 237516 CAGCAGCGCCTGATCTTCGCCGGGAAGCAACTCGAGGACGGCCGCACCCTCGCTGATTAC 237575 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 237576 AACATCCAGAAGGAGTCCAC 237595 >seq1810 Length=4673341 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || ||||| |||||||| || || || | | Sbjct 4157193 AATGCAGATCTTTGTGAAGACCCTTACTGGTAAAACCATCACTCTTGAGGTGGAGAGCTC 4157134 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | ||||| || | || ||||| ||||| | || ||||| | Sbjct 4157133 GGACACCATAGATAATGTGAAAACCAAGA-TTCAGGACAAGGAAGGGATCCCCCCAGACC 4157075 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||||||||| || || || || | | || | | ||| |||| Sbjct 4157074 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGAGGACCCTCGCCGACTACA 4157015 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||||||||| || || || Sbjct 4157014 ACATACAAAAGGAATCGAC 4156996 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| || || ||||| || || || ||||| | | Sbjct 4157877 AATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTTGAAAGCTC 4157818 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || || ||||| || || ||||| | || || || | Sbjct 4157817 GGATACGATTGATAATGTCAAGAC-CAAAATCCAGGATAAGGAAGGGATTCCCCCGGACC 4157759 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || || || ||||| | || || | | ||| || | Sbjct 4157758 AGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGGCGTACACTGGCCGACTATA 4157699 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || |||||||| ||||| |||| || ||| Sbjct 4157698 ATATTCAAAAAGAATCCACCCTACACTTGGTT 4157667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || |||||||||||||| || || || || || || || || | Sbjct 4157421 AATGCAAATTTTTGTGAAAACCCTCACGGGCAAGACAATTACCCTGGAGGTCGAAAGTTC 4157362 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || || ||||| ||||| ||||| | || || || | Sbjct 4157361 GGACACGATTGATAATGTGAAGAC-GAAAATCCAGGACAAGGAAGGAATCCCTCCGGACC 4157303 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || || || || || || | || ||| | | || |||| Sbjct 4157302 AACAGAGGCTTATTTTTGCTGGGAAGCAGCTCGAGGATGGGCGAACTCTTGCAGACTACA 4157243 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || || || || || | ||||| || | || || |||||||| Sbjct 4157242 ATATCCAGAAGGAATCGACCCTTCATTTGGTGCTTCGGCTGAGAGGAGGA 4157193 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || ||||| || ||||| | || ||||| | | Sbjct 4156965 AATGCAGATCTTTGTCAAGACGCTTACTGGAAAGACCATCACGTTGGAGGTTGAAAGCTC 4156906 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || ||||| | || ||||| || || | || || || | Sbjct 4156905 CGATACCATTGATAATGTCAAGACAAAGA-TTCAGGACAAGGAGGGAATCCCCCCTGACC 4156847 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || ||||| ||||| || | || ||||| | ||||| | Sbjct 4156846 AGCAAAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGAACTTTGGCAGATTATA 4156787 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||||||||| || Sbjct 4156786 ACATCCAAAAAGAGTCGAC 4156768 >seq5369 Length=1591519 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||| || || || || ||||| || || ||||| | || Sbjct 1427231 ATGCAGATCTTTGTTAAGACCCTGACAGGGAAGACAATCACCCTGGAGGTTGAGAGCTCG 1427172 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| || ||||| || || | || || || || Sbjct 1427171 GACACCATTGACAATGTCAAGGCGAAAA-TTCAGGACAAGGAGGGGATCCCACCGGACCA 1427113 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || || || | | || | | ||| ||||| Sbjct 1427112 GCAGAGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACCCTTGCCGACTACAA 1427053 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 1427052 CATTCAAAAGGAGTCCAC 1427035 >seq790 Length=1848252 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||||||||| || || | | Sbjct 1587318 ATGCAGATTTTTGTGAAGACCCTCACTGGTAAGACAATCACTCTCGAGGTAGAGAGCTCC 1587377 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 1587378 GATACAATTGACAATGTTAAGGC-CAAGATCCAAGACAAGGAGGGAATCCCACCAGACCA 1587436 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | ||||| || | ||| || || Sbjct 1587437 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGCACCTTGGCCGACTATAA 1587496 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1587497 CATTCAGAAGGAGTCCAC 1587514 >seq4810 Length=5543293 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| || || | | Sbjct 517765 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 517824 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | ||||| || || Sbjct 517825 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 517884 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || || || || | || || || | ||| |||||| Sbjct 517885 CAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCTTGGCCGACTACAAC 517944 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 517945 ATCCAGAAGGAGTCCAC 517961 >seq2011 Length=5003947 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || ||||| || || ||||| || || | | Sbjct 3036902 ATGCAGATATTCGTCAAGACCCTGACAGGGAAAACTATTACGCTCGAGGTGGAGAGCTCA 3036843 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| ||||| || || | ||||| || || Sbjct 3036842 GACACCATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGGATCCCGCCTGACCAG 3036783 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || || ||||||| ||||| | | |||||||| Sbjct 3036782 CAAAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGACGGGCGCACCCTCGCTGATTACAAT 3036723 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 3036722 ATCCAGAAAGAGTCCAC 3036706 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || ||||||||||||||||| || || Sbjct 3037586 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAAGTCGAGAGTTCG 3037527 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 3037526 GACACGATCGACAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCGGACCAG 3037467 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || || |||| |||| ||||| ||| |||||||||| Sbjct 3037466 CAGAGGCTGATCTTCGCCGGGAAGCAGTTGGAGGACGGCCGCACCCTAGCCGATTACAAC 3037407 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 3037406 ATCCAGAAGGAGTCGAC 3037390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337937900241740