Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq281 91.5 2e-13 >seq281 Length=1258992 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||| |||||||| | | ||| |||| || ||||| ||| ||||||| Sbjct 239396 CTGTCTTTCATACTGAGTATACAACTTCTCATATTCTTCACCCCAGCAATCTGCCAATCC 239455 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || ||||||||||| | |||||||| |||||| | | || || | || ||||| Sbjct 239456 TGGAGCCTCATTTGGGCAAAATAATGACCACACACCAT-TACTTTGGACCCTTTCCATAA 239514 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||| ||||||| ||| || ||| |||| ||| || | || || ||||| Sbjct 239515 AGAGGTCAGGTACCCAAAGGGCATAGAATAAATCACGAGCTCGGTGCTCTTC 239566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694517666119200