Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq281 102 1e-16 >seq281 Length=1258992 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | | |||||||| |||||| Sbjct 239861 CCCCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATTGGAACAATGCCA 239920 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| || |||||||| ||| ||||||||||||| || ||| Sbjct 239921 TTAGATGTGCCATTTGTCCCTCTGATATAACTACCAGTTGCACGAATATTATGAACTGAT 239980 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 239981 ACCCCAATCCCTCCAGCTGATTTGCTGATGACAGCACACTCCTTCAACGTATCATAAATT 240040 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || || || || || ||||| Sbjct 240041 CCTTCAATGCTGTCCTCTTTCATG 240064 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 |||||||||||||| | ||||||||||||||||||||||| | ||| | | || Sbjct 240192 GTTCCTGCATTAAAGAGCGTAGGAGATGCATGAGTGAACCACCGCTGAGACATCATATGA 240251 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||| ||| || | || || || | ||| ||||| ||||| || | ||||||| Sbjct 240252 TAGGTTCTAATGACAGAGTCAATGTCATCCTTATGGATTCCAACAGCAACCCTCATCAAC 240311 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || ||||| |||| || || ||| | | ||||| | ||| || | || | Sbjct 240312 ATGTGCTGGGGTCTCTCCACGACCTTCCCCTGGACCTTCAAGAGGTAAGACCTCTCAAGG 240371 Query 77174 GTTTTAAAACCAAAATA 77190 |||||||| ||||| || Sbjct 240372 GTTTTAAACCCAAAGTA 240388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712779292209600