Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq4293 138 1e-27 seq3240 138 1e-27 seq2507 116 5e-21 seq4399 105 8e-18 seq666 96.9 4e-15 seq6319 84.2 3e-11 >seq4293 Length=5823730 Score = 138 bits (152), Expect = 1e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||||| |||||||| || |||||||| | | ||||| ||||||||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| || |||| ||||| ||| ||||| |||||||| ||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 183991 GGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAAC 184050 || ||||||||||||||| | ||| | ||||||||||| || ||||| |||||||| || Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 184051 TTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTC 184110 |||||||| || | ||||| ||||||||||||| | || || ||||| || || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 184111 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAA 184151 ||||| ||| ||||| |||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq2507 Length=3123735 Score = 116 bits (128), Expect = 5e-21 Identities = 149/205 (73%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 186472 TCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCC 186531 ||||||| || || || ||||| |||| ||||| || |||||||| || || ||| | Sbjct 2014075 TCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTAT 2014016 Query 186532 TTGG---TGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATG 186588 | || || |||||| || | || |||||||||| ||| ||||||||||| | | || Sbjct 2014015 TGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 186589 AAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCT 186648 ||||||| || ||||| |||||| || || | | || |||| ||| |||| | Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 186649 ATTCGATGGTCACTGCGAACAGATT 186673 |||| |||||||||| || | ||| Sbjct 2013895 ATTCAGTGGTCACTGCTAAAATATT 2013871 >seq4399 Length=3202280 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 184067 TTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG 184126 ||||| ||||||||||||| | || || ||||| || || | ||||| | | |||| Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 184127 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 | |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq666 Length=4378875 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 183924 CTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCC 183983 |||||| | ||| || ||||||||||||||| | || |||||||| | ||||||||| Sbjct 3957874 CTTCCAATGCGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGTTGCTTGGCC 3957815 Query 183984 AGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCA 184029 || || || || |||| ||||||| | ||| |||||||||||||| Sbjct 3957814 TGTAGTAGGTATATGGTCTACTGCTTTAGGTATTAGCACTATGGCA 3957769 >seq6319 Length=5966559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 183758 GTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGG 183817 |||| ||||| ||||| || |||||||| ||||| ||||| |||| || || | | | | Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTG 1421186 Query 183818 TTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 183876 || | |||||||| || ||| | || | ||||||| ||||| ||||| ||| Sbjct 1421185 ATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAA 1421126 Query 183877 GAGACCTACAACATTGTCGCTGCTCATGG--ATACTTTG 183913 || || || || || || ||||||||||| || ||||| Sbjct 1421125 GAAACTTATAATATCGTAGCTGCTCATGGTTATTCTTTG 1421087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621935060808600