Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq4293 123 3e-23 seq3240 123 3e-23 seq2507 113 5e-20 seq4399 93.3 5e-14 seq2492 91.5 2e-13 >seq4293 Length=5823730 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 164765 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164824 ||||| || |||||||| |||||||| | | | ||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 164825 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAAT 164884 || ||||| || |||| ||||| ||| || || |||||||| ||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 164885 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 164915 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 164723 GGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 164782 |||||||||||||||||| | || | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 164783 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTC 164842 |||||||| || | | ||| |||| |||||||| | || || ||||| || || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 164843 AACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAA 164883 ||||| ||| || || |||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq2507 Length=3123735 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 165664 TCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCT 165723 |||||||||| ||||| ||||| ||| || ||||| |||||||| || || ||| | | Sbjct 2014075 TCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTAT 2014016 Query 165724 TAGGCGGAGCATTGCTTT-CT----GCCATTCATGGTGTTACAGTAGAGAATACTTTGTA 165778 | |||| || |||| | || || || ||||||| |||| |||| |||||| | | Sbjct 2014015 TGGGCGCTGC--TGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATT 2013958 Query 165779 TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAAC 165838 |||||||||||| ||||| || ||| || ||| | ||||| | || |||| Sbjct 2013957 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAAC 2013898 Query 165839 TTATTCCATGGTCACTGCTAA 165859 |||||| ||||||||||||| Sbjct 2013897 TTATTCAGTGGTCACTGCTAA 2013877 >seq4399 Length=3202280 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 164801 GATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGC 164860 ||| |||| |||||||| | || || ||||| || || | ||||| | | || || Sbjct 214295 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGT 214236 Query 164861 ATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||| Sbjct 214235 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq2492 Length=5361119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 165402 CAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCAC 165461 ||||| || || | || ||||| ||| | || || || ||||||||||| || |||||| Sbjct 375400 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 375459 Query 165462 GGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGG 165520 || || || | ||| |||||||||||| | || || |||||||| || ||| || || Sbjct 375460 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 375519 Query 165521 TATTCGTCCTTACAATGCTATTGC 165544 | | || ||||| ||||| || || Sbjct 375520 T-TGCGACCTTATAATGCAATCGC 375542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557533075314600