Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2507 129 7e-25 seq4293 120 4e-22 seq3240 120 4e-22 seq6319 96.9 4e-15 seq2492 91.5 2e-13 seq4399 89.7 6e-13 >seq2507 Length=3123735 Score = 129 bits (142), Expect = 7e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 179658 GGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAG 179717 ||||| || || ||||| | || |||||||| ||||| || |||||| | || || || Sbjct 2652287 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAA 2652228 Query 179718 GATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCT 179777 |||||||| || || || ||||| ||||| || || || || || |||||| | |||||| Sbjct 2652227 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 2652168 Query 179778 TGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCA 179837 |||||||| | ||||| || ||||||||| || |||| || || || || | || Sbjct 2652167 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCC 2652108 Query 179838 AGAGGCAACGCTCT 179851 | || |||||||| Sbjct 2652107 CGTGGAAACGCTCT 2652094 >seq4293 Length=5823730 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||||| || |||||||| |||||||| | | | |||||||| || || | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||| || |||| ||||| ||| |||||||||||||| ||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTG 178585 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 178393 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 178452 ||||||||||| |||||| | ||| | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 178453 TTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTC 178512 |||||||| || | | |||||||| || || | || || ||||| || || | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 178513 AACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAA 178553 ||||| ||| |||||||||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq6319 Length=5966559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 178160 GTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGG 178219 |||| || || ||||| || |||||||| ||||| ||||| |||| || || | | | | Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTG 1421186 Query 178220 TTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 178278 || | |||||||| || || ||| | || | ||||||| ||||| ||||| ||| Sbjct 1421185 ATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAA 1421126 Query 178279 GAGACCTACAACATCGTTGCTGCTCATGGTTA 178310 || || || || ||||| |||||||||||||| Sbjct 1421125 GAAACTTATAATATCGTAGCTGCTCATGGTTA 1421094 >seq2492 Length=5361119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 || |||||| || |||||||| || ||| ||| | || || || ||| ||||||| Sbjct 375390 TCAAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 375449 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG 179197 || |||||||| || |||| || |||||||||||| | || || |||||| | || || Sbjct 375450 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 375509 Query 179198 -TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230 ||| || | | || ||||| ||||||||||| Sbjct 375510 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 375542 >seq4399 Length=3202280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 178471 GATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT 178530 |||||||| || || | || || ||||| || || | ||||| | | |||||| Sbjct 214295 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGT 214236 Query 178531 ATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCT 178584 |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||| Sbjct 214235 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596177465914800