Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2507 150 2e-31 seq4293 129 7e-25 seq4399 98.7 1e-15 >seq2507 Length=3123735 Score = 150 bits (166), Expect = 2e-31 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 171370 TTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATC 171429 |||| || || | ||| | ||| | ||| ||| || | | ||||| ||||| || | Sbjct 2652331 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 2652272 Query 171430 TTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGA 171489 | | || ||||| ||||| |||||| || | ||||| |||||||| || || || | Sbjct 2652271 TACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAAA 2652212 Query 171490 CGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAG 171549 | ||||| ||||| || || || || || |||||| ||||||| |||||||| | || Sbjct 2652211 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 2652152 Query 171550 ACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTT 171609 | || || ||||||||| || | ||||||||||| |||||||| ||||| || || |||| Sbjct 2652151 ATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 2652092 Query 171610 GAT 171612 || Sbjct 2652091 AAT 2652089 Score = 122 bits (134), Expect = 1e-22 Identities = 148/199 (74%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 171108 CAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTC 171167 ||||| || || || |||||| ||| ||||||||||||||||| ||||| ||| | | Sbjct 2014073 CAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTG 2014014 Query 171168 GGCGGTGCATTGCTTT-CT----GCAATTCATGGTGTTACAGTAGAGAATACTTTGTATG 171222 |||| ||| |||| | || || || ||||||| |||| |||| |||||| | | || Sbjct 2014013 GGCGCTGC--TGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 171223 AAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACAT 171282 ||||||||||| ||||| || || || ||| || | ||||| | ||| | || | Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 171283 ATTCTATGGTCACTGCTAA 171301 |||| ||||||||||||| Sbjct 2013895 ATTCAGTGGTCACTGCTAA 2013877 >seq4293 Length=5823730 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 170189 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 170248 ||||| || |||||||| |||||||| | | | ||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 170249 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 170308 || ||||| || |||| ||||| ||| ||||| |||||||| ||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 170309 GCTCACAACTTCCCTCTCGACCTCGCTGCTG 170339 ||||| ||||||||||| ||||| ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq4399 Length=3202280 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 170225 GATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGC 170284 ||| |||| |||||||| | || || ||||| || || | ||||| | | ||||| Sbjct 214295 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGT 214236 Query 170285 ATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||| Sbjct 214235 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592069559835600