Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2495 87.8 2e-12 >seq2495 Length=1658871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23812 GAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGA 23871 ||||| | ||| || |||||||| ||||| ||||| || || ||| || | | ||| Sbjct 1091380 GAATGTACATTCTCCATAGCAATTTGAAAGCCATAGAATGCTCGAGCCTCGGGGATTTGG 1091321 Query 23872 ACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAG 23931 |||||||| | |||||| || ||||| ||| ||||||||||| || |||||| Sbjct 1091320 ACATCATTTAGAAATCTCGCTGCCAAATTCTCGAGGACAATACCATCGGATGCGGCAAAG 1091261 Query 23932 AAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGT-TGATAATTTTTTCCAATCATT 23990 || || || |||| ||||||| || ||| | ||| | || || | ||||| | Sbjct 1091260 AAGGCGAGCACATGGCTTATAAAGTG-CTTCTCTGAGTCCGTCAAATTCTGCCAATGCTG 1091202 Query 23991 AATATCTTTTGATAAATCAACTTCATC 24017 | ||| | |||| ||||||||| || Sbjct 1091201 TACATCCTGGGATAGATCAACTTCCTC 1091175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521374543767000