Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq202 140 3e-28
seq1330 134 1e-26
seq801 134 1e-26
>seq202
Length=624202
Score = 140 bits (154), Expect = 3e-28
Identities = 296/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || |
Sbjct 31367 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 31426
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| |||| || ||||| || || || || | ||||||||||||| ||| ||| |
Sbjct 31427 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 31486
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | ||
Sbjct 31487 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAGC 31546
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || |||||| || | |||||| ||| || | | | |||| || || || |
Sbjct 31547 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGA 31603
Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255
| || | || | | || || | ||| | || ||||| |||| || ||||
Sbjct 31604 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 31663
Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315
||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| |
Sbjct 31664 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 31723
Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
| || | || || ||| | || || | | || |||||||| || |||||||||
Sbjct 31724 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACAATGCCGTCG 31782
Query 17375 CTCGCGGCGAAAAACGC 17391
|| ||||| || ||
Sbjct 31783 GAGGCAGCGAAGAAGGC 31799
>seq1330
Length=73179
Score = 134 bits (148), Expect = 1e-26
Identities = 295/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Minus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || |
Sbjct 26770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 26711
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| |||| || ||||| || || || || | ||||||||||||| ||| ||| |
Sbjct 26710 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 26651
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | ||
Sbjct 26650 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 26591
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || |||||| || | |||||| ||| || | | | ||| || || || |
Sbjct 26590 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 26534
Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255
| || | || | | || || | ||| | || ||||| |||| || ||||
Sbjct 26533 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 26474
Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315
||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| |
Sbjct 26473 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 26414
Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
| || | || || ||| | || || | | || |||||||| |||||||| |||
Sbjct 26413 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 26355
Query 17375 CTCGCGGCGAAAAACGC 17391
|| ||||| || ||
Sbjct 26354 GAGGCAGCGAAGAAGGC 26338
Score = 134 bits (148), Expect = 1e-26
Identities = 295/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || |
Sbjct 46410 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 46469
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| |||| || ||||| || || || || | ||||||||||||| ||| ||| |
Sbjct 46470 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 46529
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | ||
Sbjct 46530 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 46589
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || |||||| || | |||||| ||| || | | | ||| || || || |
Sbjct 46590 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 46646
Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255
| || | || | | || || | ||| | || ||||| |||| || ||||
Sbjct 46647 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 46706
Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315
||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| |
Sbjct 46707 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 46766
Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
| || | || || ||| | || || | | || |||||||| |||||||| |||
Sbjct 46767 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 46825
Query 17375 CTCGCGGCGAAAAACGC 17391
|| ||||| || ||
Sbjct 46826 GAGGCAGCGAAGAAGGC 46842
>seq801
Length=188201
Score = 134 bits (148), Expect = 1e-26
Identities = 295/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Minus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || |
Sbjct 11771 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 11712
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| |||| || ||||| || || || || | ||||||||||||| ||| ||| |
Sbjct 11711 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 11652
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | ||
Sbjct 11651 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 11592
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || |||||| || | |||||| ||| || | | | ||| || || || |
Sbjct 11591 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 11535
Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255
| || | || | | || || | ||| | || ||||| |||| || ||||
Sbjct 11534 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 11475
Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315
||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| |
Sbjct 11474 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 11415
Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
| || | || || ||| | || || | | || |||||||| |||||||| |||
Sbjct 11414 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 11356
Query 17375 CTCGCGGCGAAAAACGC 17391
|| ||||| || ||
Sbjct 11355 GAGGCAGCGAAGAAGGC 11339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517531483943760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |