Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq202 140 3e-28 seq1330 134 1e-26 seq801 134 1e-26 >seq202 Length=624202 Score = 140 bits (154), Expect = 3e-28 Identities = 296/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || | Sbjct 31367 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 31426 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 31427 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 31486 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | || Sbjct 31487 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAGC 31546 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | |||| || || || | Sbjct 31547 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGA 31603 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | ||| | || ||||| |||| || |||| Sbjct 31604 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 31663 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| | Sbjct 31664 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 31723 Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | || | || || ||| | || || | | || |||||||| || ||||||||| Sbjct 31724 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACAATGCCGTCG 31782 Query 17375 CTCGCGGCGAAAAACGC 17391 || ||||| || || Sbjct 31783 GAGGCAGCGAAGAAGGC 31799 >seq1330 Length=73179 Score = 134 bits (148), Expect = 1e-26 Identities = 295/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || | Sbjct 26770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 26711 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 26710 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 26651 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | || Sbjct 26650 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 26591 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | ||| || || || | Sbjct 26590 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 26534 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | ||| | || ||||| |||| || |||| Sbjct 26533 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 26474 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| | Sbjct 26473 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 26414 Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | || | || || ||| | || || | | || |||||||| |||||||| ||| Sbjct 26413 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 26355 Query 17375 CTCGCGGCGAAAAACGC 17391 || ||||| || || Sbjct 26354 GAGGCAGCGAAGAAGGC 26338 Score = 134 bits (148), Expect = 1e-26 Identities = 295/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || | Sbjct 46410 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 46469 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 46470 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 46529 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | || Sbjct 46530 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 46589 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | ||| || || || | Sbjct 46590 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 46646 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | ||| | || ||||| |||| || |||| Sbjct 46647 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 46706 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| | Sbjct 46707 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 46766 Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | || | || || ||| | || || | | || |||||||| |||||||| ||| Sbjct 46767 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 46825 Query 17375 CTCGCGGCGAAAAACGC 17391 || ||||| || || Sbjct 46826 GAGGCAGCGAAGAAGGC 46842 >seq801 Length=188201 Score = 134 bits (148), Expect = 1e-26 Identities = 295/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || | Sbjct 11771 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 11712 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 11711 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 11652 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | || Sbjct 11651 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 11592 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | ||| || || || | Sbjct 11591 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 11535 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | ||| | || ||||| |||| || |||| Sbjct 11534 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 11475 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| | Sbjct 11474 TGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 11415 Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | || | || || ||| | || || | | || |||||||| |||||||| ||| Sbjct 11414 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 11356 Query 17375 CTCGCGGCGAAAAACGC 17391 || ||||| || || Sbjct 11355 GAGGCAGCGAAGAAGGC 11339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531483943760