Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq202 91.5 2e-13
seq1330 89.7 5e-13
seq801 89.7 5e-13
>seq202
Length=624202
Score = 91.5 bits (100), Expect = 2e-13
Identities = 292/444 (66%), Gaps = 13/444 (3%)
Strand=Plus/Plus
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
||||||||||||||| || | || ||||||| ||| || |||||||| ||||| |
Sbjct 31374 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 31433
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319
|| |||||| || || || || | ||| |||||||| ||| || |||||| ||||
Sbjct 31434 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 31492
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATT 16377
| || ||||| || | ||||| || | | ||| |||||| | | | | | | |
Sbjct 31493 AAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAGCCGT--- 31549
Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437
|| |||||| || | |||| | ||| || | | ||| || || || || ||
Sbjct 31550 -CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGC 31607
Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497
| || | | || || | || | || ||||| || | || | |||||
Sbjct 31608 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 31667
Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557
||| || ||||| |||||||| ||||| ||||| || || |||||| || ||||| ||
Sbjct 31668 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 31727
Query 16558 TATTTGTACTTCC-ACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615
| || || ||| | |||| | | || || || || ||| || || |||||
Sbjct 31728 GACCTGGACCTCCTTCATAAA--CCTCCCAGCGAGATTTTCAAGGACAATGCCGTCGGAG 31785
Query 16616 GCAGCAAAAAACGCCAATATGTGC 16639
||||| || || || | ||||||
Sbjct 31786 GCAGCGAAGAAGGCGAGAATGTGC 31809
>seq1330
Length=73179
Score = 89.7 bits (98), Expect = 5e-13
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
||||||||||||||| || | || ||||||| ||| || |||||||| ||||| |
Sbjct 26763 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 26704
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319
|| |||||| || || || || | ||| |||||||| ||| || |||||| ||||
Sbjct 26703 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 26645
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360
| || ||||| || | ||||| || | | ||| ||||||
Sbjct 26644 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 26604
Score = 89.7 bits (98), Expect = 5e-13
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
||||||||||||||| || | || ||||||| ||| || |||||||| ||||| |
Sbjct 46417 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 46476
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319
|| |||||| || || || || | ||| |||||||| ||| || |||||| ||||
Sbjct 46477 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 46535
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360
| || ||||| || | ||||| || | | ||| ||||||
Sbjct 46536 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 46576
>seq801
Length=188201
Score = 89.7 bits (98), Expect = 5e-13
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
||||||||||||||| || | || ||||||| ||| || |||||||| ||||| |
Sbjct 11764 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 11705
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319
|| |||||| || || || || | ||| |||||||| ||| || |||||| ||||
Sbjct 11704 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 11646
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360
| || ||||| || | ||||| || | | ||| ||||||
Sbjct 11645 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 11605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511400451172240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |