Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq202 91.5 2e-13 seq1330 89.7 5e-13 seq801 89.7 5e-13 >seq202 Length=624202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 292/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| || |||||||| ||||| | Sbjct 31374 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 31433 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || |||||| |||| Sbjct 31434 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 31492 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATT 16377 | || ||||| || | ||||| || | | ||| |||||| | | | | | | | Sbjct 31493 AAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAGCCGT--- 31549 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || |||||| || | |||| | ||| || | | ||| || || || || || Sbjct 31550 -CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGC 31607 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | || || | || | || ||||| || | || | ||||| Sbjct 31608 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 31667 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 ||| || ||||| |||||||| ||||| ||||| || || |||||| || ||||| || Sbjct 31668 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 31727 Query 16558 TATTTGTACTTCC-ACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||| | |||| | | || || || || ||| || || ||||| Sbjct 31728 GACCTGGACCTCCTTCATAAA--CCTCCCAGCGAGATTTTCAAGGACAATGCCGTCGGAG 31785 Query 16616 GCAGCAAAAAACGCCAATATGTGC 16639 ||||| || || || | |||||| Sbjct 31786 GCAGCGAAGAAGGCGAGAATGTGC 31809 >seq1330 Length=73179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| || |||||||| ||||| | Sbjct 26763 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 26704 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || |||||| |||| Sbjct 26703 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 26645 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 | || ||||| || | ||||| || | | ||| |||||| Sbjct 26644 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 26604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| || |||||||| ||||| | Sbjct 46417 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 46476 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || |||||| |||| Sbjct 46477 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 46535 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 | || ||||| || | ||||| || | | ||| |||||| Sbjct 46536 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 46576 >seq801 Length=188201 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| || |||||||| ||||| | Sbjct 11764 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAG 11705 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || |||||| |||| Sbjct 11704 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 11646 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 | || ||||| || | ||||| || | | ||| |||||| Sbjct 11645 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 11605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400451172240