Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15 105 1e-17 seq687 104 4e-17 seq59 104 4e-17 seq615 98.7 2e-15 seq580 87.8 3e-12 seq54 87.8 3e-12 seq1 84.2 3e-11 >seq15 Length=1624393 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || |||||||| || || || || || || || || ||||| || ||||| ||||| Sbjct 1075431 AAGATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGAGGCTGATCTTTGCCGGAAAG 1075372 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | ||||| ||| |||||||||||||| ||||| || || | || Sbjct 1075371 CAGTTGGAGGATGGCCGAACCCTAGCCGATTATAATATTCAGAAAGAGTCGACCCTCCAC 1075312 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | || ||| |||| ||||| Sbjct 1075311 TTGGTTCTGCGATTAAGAGGAGGTAT 1075286 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || ||| | ||| | ||| | Sbjct 1057840 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACAATTACTTTGGAGGTCGAAAGTTCT 1057781 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT-GATCA 124657 ||||| || ||| | || || || |||||||| || || || || || || || Sbjct 1057780 GATACGATCGATAACGTCAAGGCAAAGATCCAAGATAAGGAGGGAATCCCCCCCAGACCA 1057721 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | |||||||| || || ||||| |||||| | | || | | ||||| || Sbjct 1057720 GCAGAGATTAATTTTTGCTGGTAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACAA 1057661 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||||||||| |||||| | || | | |||||||| Sbjct 1057660 CATCCAAAAGGAGTCAACTTTGCACTTGGTTCTTCGACTGAGGGGTGGTAT 1057610 >seq687 Length=229775 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || ||||| || ||| | ||| |||| ||| Sbjct 53116 ATGCAAATATTTGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAGGTTGAGAGC-TC 53174 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || || || ||||| ||||| ||||| ||||| || || Sbjct 53175 TGACACGATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 53234 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | ||||| | || || | | || || || Sbjct 53235 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAA 53294 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || |||||| | ||| | || |||||||| Sbjct 53295 CATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 53345 >seq59 Length=1152742 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || ||||| || ||| | ||| |||| ||| Sbjct 730597 ATGCAAATATTTGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAGGTTGAGAGC-TC 730655 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || || || ||||| ||||| ||||| ||||| || || Sbjct 730656 TGACACGATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 730715 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | ||||| | || || | | || || || Sbjct 730716 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAA 730775 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || |||||| | ||| | || |||||||| Sbjct 730776 CATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 730826 >seq615 Length=266788 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||||||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 187885 TTCAGGATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAAT 187826 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | ||||| | | ||||||||| || ||||| || ||||| | || ||| Sbjct 187825 TGGAAGATGGCCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACACTTCACCTGG 187766 Query 124747 TTTT 124750 |||| Sbjct 187765 TTTT 187762 >seq580 Length=281551 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| || || || ||||| || || || |||||||| ||||| ||||| Sbjct 200163 AAGATTCAAGATAAGGAGGGCATCCCACCAGACCAGCAGAGGCTTATCTTTGCTGGAAAG 200222 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || | | || || || || || || || || ||| | ||| Sbjct 200223 CAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 200282 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||| | || ||||| || Sbjct 200283 TTGGTTTTGCGTCTCCGTGGTGGCAT 200308 >seq54 Length=1192742 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| || || || ||||| || || || |||||||| ||||| ||||| Sbjct 263814 AAGATTCAAGATAAGGAGGGCATCCCACCAGACCAGCAGAGGCTTATCTTTGCTGGAAAG 263873 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || | | || || || || || || || || ||| | ||| Sbjct 263874 CAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 263933 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||| | || ||||| || Sbjct 263934 TTGGTTTTGCGTCTCCGTGGTGGCAT 263959 >seq1 Length=4167794 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || || || || ||||| || || || |||||||| ||||||||||| Sbjct 1162519 AAGATTCAAGACAAGGAGGGCATCCCACCGGACCAGCAGAGGCTTATCTTTGCAGGAAAG 1162460 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || | | || || || || || ||||| || ||| | ||| Sbjct 1162459 CAGCTCGAGGACGGCCGCACCCTTGCCGACTACAACATCCAGAAAGAGTCCACTCTTCAT 1162400 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || ||||| || Sbjct 1162399 TTGGTGCTTCGTCTCCGTGGTGGCAT 1162374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755435394937600