Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq615 109 8e-19 seq15 93.3 6e-14 >seq615 Length=266788 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || || || || || ||||||||| Sbjct 187744 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATGTTATAATCT 187803 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||||||||| || ||||| ||| Sbjct 187804 GCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGTTGATCAGGA 187863 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 187864 GGGATGCCTTCTTTATCCTG 187883 >seq15 Length=1624393 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || |||| | ||||| || ||||| || || || || || ||||| | | Sbjct 1057613 CCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 1057672 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATC-CGGAGG 146169 ||||| |||| ||| || ||||| || ||||||||||| ||||| ||||| || || || Sbjct 1057673 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGGGGG 1057732 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 1057733 GATTCCCTCCTTATCTTG 1057750 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||| || | || || ||||| ||||||||||| | Sbjct 1075289 CCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCGGCT 1075348 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || ||| || || || ||||| ||||| |||| || ||||| ||||| ||| Sbjct 1075349 AGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 1075408 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 1075409 ATTCCCTCCTTATCTTG 1075425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743506120317440