Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1330 91.5 3e-13
seq801 91.5 3e-13
seq8 91.5 3e-13
seq202 87.8 4e-12
>seq1330
Length=73179
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318
|||||| | || | |||||||| ||||||||||| ||||| || |||| ||||||
Sbjct 27047 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 26988
Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378
|| ||||| ||||| | ||||||| ||||||||| |||| | | ||| ||| |
Sbjct 26987 CAATCGAACGGGTTCTGGACATTGTACATCTTGTCGTATCCCAACGAGCCCAG-CAGCCG 26929
Query 157379 -TCCGCCACAAACTTGATGTAC 157399
|||||||| |||| |||||||
Sbjct 26928 ATCCGCCACGAACTCGATGTAC 26907
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318
|||||| | || | |||||||| ||||||||||| ||||| || |||| ||||||
Sbjct 46133 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 46192
Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378
|| ||||| ||||| | ||||||| ||||||||| |||| | | ||| ||| |
Sbjct 46193 CAATCGAACGGGTTCTGGACATTGTACATCTTGTCGTATCCCAACGAGCCCAG-CAGCCG 46251
Query 157379 -TCCGCCACAAACTTGATGTAC 157399
|||||||| |||| |||||||
Sbjct 46252 ATCCGCCACGAACTCGATGTAC 46273
>seq801
Length=188201
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318
|||||| | || | |||||||| ||||||||||| ||||| || |||| ||||||
Sbjct 12048 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 11989
Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378
|| ||||| ||||| | ||||||| ||||||||| |||| | | ||| ||| |
Sbjct 11988 CAATCGAACGGGTTCTGGACATTGTACATCTTGTCGTATCCCAACGAGCCCAG-CAGCCG 11930
Query 157379 -TCCGCCACAAACTTGATGTAC 157399
|||||||| |||| |||||||
Sbjct 11929 ATCCGCCACGAACTCGATGTAC 11908
>seq8
Length=1797525
Score = 91.5 bits (100), Expect = 3e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || || || |||| ||||| ||||| || || |||| || || ||| | || ||
Sbjct 9815 GACTTTGACTATGATTACTTTGGCTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAGGTT 9874
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
| |||||| | |||||| || ||| |||||| | ||| | || |||| |||||||||
Sbjct 9875 CAAGGCAAGGTTGTGGAAAGACCTCAACACATGCTAATGAGGGTTTCTGTTGGGATTCAC 9934
Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987
||||| || || || || || |||| || |||| | ||| | | || ||| | ||
Sbjct 9935 AAGGACGATATTGATTCTGTTATCAAGACATATCACCTG-ATGTCTCAGCGGTGGTTCAC 9993
Query 248988 ACATGCCACACCGACGCTCTTCAA 249011
||||| | || || ||||||||
Sbjct 9994 TCATGCTTCTCCCACCCTCTTCAA 10017
>seq202
Length=624202
Score = 87.8 bits (96), Expect = 4e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318
|||||| | || | |||||||| ||||||||||| ||||| || |||| ||||||
Sbjct 31090 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 31149
Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378
|| ||||| ||||| | ||||||| |||| |||| |||| | | ||| ||| |
Sbjct 31150 CAGTCGAAGGGGTTCTGGACATTGTACATCTTGCCGTATCCCAACGAGCCCAG-CAGCCG 31208
Query 157379 -TCCGCCACAAACTTGATGTAC 157399
|||||||| |||| |||||||
Sbjct 31209 ATCCGCCACGAACTCGATGTAC 31230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073736380846976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |