Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1330 91.5 3e-13 seq801 91.5 3e-13 seq8 91.5 3e-13 seq202 87.8 4e-12 >seq1330 Length=73179 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| | || | |||||||| ||||||||||| ||||| || |||| |||||| Sbjct 27047 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 26988 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378 || ||||| ||||| | ||||||| ||||||||| |||| | | ||| ||| | Sbjct 26987 CAATCGAACGGGTTCTGGACATTGTACATCTTGTCGTATCCCAACGAGCCCAG-CAGCCG 26929 Query 157379 -TCCGCCACAAACTTGATGTAC 157399 |||||||| |||| ||||||| Sbjct 26928 ATCCGCCACGAACTCGATGTAC 26907 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| | || | |||||||| ||||||||||| ||||| || |||| |||||| Sbjct 46133 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 46192 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378 || ||||| ||||| | ||||||| ||||||||| |||| | | ||| ||| | Sbjct 46193 CAATCGAACGGGTTCTGGACATTGTACATCTTGTCGTATCCCAACGAGCCCAG-CAGCCG 46251 Query 157379 -TCCGCCACAAACTTGATGTAC 157399 |||||||| |||| ||||||| Sbjct 46252 ATCCGCCACGAACTCGATGTAC 46273 >seq801 Length=188201 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| | || | |||||||| ||||||||||| ||||| || |||| |||||| Sbjct 12048 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 11989 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378 || ||||| ||||| | ||||||| ||||||||| |||| | | ||| ||| | Sbjct 11988 CAATCGAACGGGTTCTGGACATTGTACATCTTGTCGTATCCCAACGAGCCCAG-CAGCCG 11930 Query 157379 -TCCGCCACAAACTTGATGTAC 157399 |||||||| |||| ||||||| Sbjct 11929 ATCCGCCACGAACTCGATGTAC 11908 >seq8 Length=1797525 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| ||||| || || |||| || || ||| | || || Sbjct 9815 GACTTTGACTATGATTACTTTGGCTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAGGTT 9874 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | |||||| | |||||| || ||| |||||| | ||| | || |||| ||||||||| Sbjct 9875 CAAGGCAAGGTTGTGGAAAGACCTCAACACATGCTAATGAGGGTTTCTGTTGGGATTCAC 9934 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||| || || || || || |||| || |||| | ||| | | || ||| | || Sbjct 9935 AAGGACGATATTGATTCTGTTATCAAGACATATCACCTG-ATGTCTCAGCGGTGGTTCAC 9993 Query 248988 ACATGCCACACCGACGCTCTTCAA 249011 ||||| | || || |||||||| Sbjct 9994 TCATGCTTCTCCCACCCTCTTCAA 10017 >seq202 Length=624202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| | || | |||||||| ||||||||||| ||||| || |||| |||||| Sbjct 31090 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 31149 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378 || ||||| ||||| | ||||||| |||| |||| |||| | | ||| ||| | Sbjct 31150 CAGTCGAAGGGGTTCTGGACATTGTACATCTTGCCGTATCCCAACGAGCCCAG-CAGCCG 31208 Query 157379 -TCCGCCACAAACTTGATGTAC 157399 |||||||| |||| ||||||| Sbjct 31209 ATCCGCCACGAACTCGATGTAC 31230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073736380846976