Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq202 129 7e-25
seq1330 125 9e-24
seq801 125 9e-24
seq8 113 6e-20
>seq202
Length=624202
Score = 129 bits (142), Expect = 7e-25
Identities = 241/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Plus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| |||||| ||||| |||||||||| |||||||||| || | ||||| || |
Sbjct 31367 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 31426
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 31427 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 31486
Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33749
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 31487 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAG 31545
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809
| ||| ||||| | | ||||| | ||||||||| || ||||| || || ||
Sbjct 31546 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCG 31602
Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 31603 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 31662
Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 31663 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 31712
>seq1330
Length=73179
Score = 125 bits (138), Expect = 9e-24
Identities = 240/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Minus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| |||||| ||||| |||||||||| |||||||||| || | ||||| || |
Sbjct 26770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 26711
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 26710 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 26651
Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33749
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 26650 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 26592
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 26591 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 26535
Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 26534 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 26475
Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 26474 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 26425
Score = 125 bits (138), Expect = 9e-24
Identities = 240/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Plus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| |||||| ||||| |||||||||| |||||||||| || | ||||| || |
Sbjct 46410 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 46469
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 46470 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 46529
Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33749
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 46530 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 46588
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 46589 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 46645
Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 46646 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 46705
Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 46706 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 46755
>seq801
Length=188201
Score = 125 bits (138), Expect = 9e-24
Identities = 240/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Minus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| |||||| ||||| |||||||||| |||||||||| || | ||||| || |
Sbjct 11771 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 11712
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 11711 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 11652
Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33749
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 11651 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 11593
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 11592 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 11536
Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 11535 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 11476
Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 11475 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 11426
>seq8
Length=1797525
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| ||||| | || | || || | |||| |||||||||||||||||| ||| ||
Sbjct 10363 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCC 10304
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|| || | ||||| || || ||||| | || ||||||| || ||| || |||
Sbjct 10303 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 10244
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| ||| ||||| || || ||| ||| | || ||| ||| || || ||||| ||
Sbjct 10243 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 10184
Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643
|||||| ||||||||||| ||||| || || || |||||
Sbjct 10183 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629800421724960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |