Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq580 98.7 1e-15 seq54 98.7 1e-15 seq1 91.5 1e-13 seq15 82.4 8e-11 >seq580 Length=281551 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || Sbjct 199621 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCA 199562 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| || ||||| |||||||||| ||||| || || || Sbjct 199561 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 199502 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 199501 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 199442 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 199441 TCGAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 199395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| |||||||| || || ||||| || ||| | || || || || Sbjct 200060 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTC 200001 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||||| | ||||| || || || ||||| || ||||| Sbjct 200000 AAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 199941 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| || | | || | || |||| | ||||||||||| ||| | ||||| Sbjct 199940 GATTTTGGCCTTGACATTGTCAATGGTATCGGATGACTCCACCTCAAGGGTGATGGTCTT 199881 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || ||||| || ||||| Sbjct 199880 GCCGGTGAGGGTCTTAACGAAGATCTGCAT 199851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || |||||||| || ||||| ||||| Sbjct 199850 GCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGC 199791 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||||| || ||||| |||||||||| ||||| || || || Sbjct 199790 AAGGGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 199731 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | | |||||| Sbjct 199730 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCAC 199671 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || || || || ||||| Sbjct 199670 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 199623 >seq54 Length=1192742 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || Sbjct 263272 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCA 263213 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| || ||||| |||||||||| ||||| || || || Sbjct 263212 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 263153 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 263152 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 263093 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 263092 TCGAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 263046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| |||||||| || || ||||| || ||| | || || || || Sbjct 263711 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTC 263652 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||||| | ||||| || || || ||||| || ||||| Sbjct 263651 AAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 263592 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| || | | || | || |||| | ||||||||||| ||| | ||||| Sbjct 263591 GATTTTGGCCTTGACATTGTCAATGGTATCGGATGACTCCACCTCAAGGGTGATGGTCTT 263532 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || ||||| || ||||| Sbjct 263531 GCCGGTGAGGGTCTTAACGAAGATCTGCAT 263502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || |||||||| || ||||| ||||| Sbjct 263501 GCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGC 263442 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||||| || ||||| |||||||||| ||||| || || || Sbjct 263441 AAGGGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 263382 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | | |||||| Sbjct 263381 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCAC 263322 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || || || || ||||| Sbjct 263321 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 263274 >seq1 Length=4167794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || |||| || |||||||| || ||||| || ||| Sbjct 1162376 GCCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 1162435 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || ||| |||| || | ||||| || || || Sbjct 1162436 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 1162495 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | ||||||| | ||||| Sbjct 1162496 GATGCCCTCCTTGTCT-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCA 1162554 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| || || | || || ||||| |||||||| Sbjct 1162555 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATTTGCAT 1162603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| ||||| Sbjct 1162832 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTGC 1162891 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||||||||| || || || |||| ||||| ||||| || || || Sbjct 1162892 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 1162951 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | ||||||| | ||| || Sbjct 1162952 GATCCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 1163011 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 1163012 CTCGAGGGTGATGGTCTTTCCAGTAAGGGTTTTCACGAAGATTTGCAT 1163059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || |||||||||||||| | Sbjct 1161921 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCC 1161980 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||| |||||||| |||||| | ||||| || ||||| Sbjct 1161981 AGGGTCCTTCCATCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1162040 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 1162041 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACC 1162100 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || ||||| || || || || || |||||| Sbjct 1162101 TCCAAGGTGATGGTCTTCCCTGTCAAGGTCTTCACAAAGATCTGCATA 1162148 >seq15 Length=1624393 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || |||| || || |||||||||||||| ||||| || ||| Sbjct 1058142 TCCTCGAGCTGCTTCCCGGCGAAGATAAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTG 1058201 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||| ||||| | || | Sbjct 1058202 TCCTGGATCTTAGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATG 1058261 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| || ||||| Sbjct 1058262 GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1058296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050469854400