Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq580 98.7 1e-15
seq54 98.7 1e-15
seq1 91.5 1e-13
seq15 82.4 8e-11
>seq580
Length=281551
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| ||||| ||||| || ||
Sbjct 199621 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCA 199562
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||||||||||| || ||||| |||||||||| ||||| || || ||
Sbjct 199561 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 199502
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || || | | || | ||||| | | |||||||
Sbjct 199501 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 199442
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 199441 TCGAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 199395
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| ||||||| |||||||| || || ||||| || ||| | || || || ||
Sbjct 200060 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTC 200001
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| || |||||| |||||| | ||||| || || || ||||| || |||||
Sbjct 200000 AAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 199941
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
|||||| || | | || | || |||| | ||||||||||| ||| | |||||
Sbjct 199940 GATTTTGGCCTTGACATTGTCAATGGTATCGGATGACTCCACCTCAAGGGTGATGGTCTT 199881
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| | || || ||||| || |||||
Sbjct 199880 GCCGGTGAGGGTCTTAACGAAGATCTGCAT 199851
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || |||||||| || ||||| |||||
Sbjct 199850 GCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGC 199791
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||||||||||| || ||||| |||||||||| ||||| || || ||
Sbjct 199790 AAGGGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 199731
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | ||||| | | ||||||
Sbjct 199730 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCAC 199671
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||||||||| | || || || || || |||||
Sbjct 199670 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 199623
>seq54
Length=1192742
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| ||||| ||||| || ||
Sbjct 263272 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCA 263213
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||||||||||| || ||||| |||||||||| ||||| || || ||
Sbjct 263212 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 263153
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || || | | || | ||||| | | |||||||
Sbjct 263152 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 263093
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 263092 TCGAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 263046
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| ||||||| |||||||| || || ||||| || ||| | || || || ||
Sbjct 263711 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTC 263652
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| || |||||| |||||| | ||||| || || || ||||| || |||||
Sbjct 263651 AAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 263592
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
|||||| || | | || | || |||| | ||||||||||| ||| | |||||
Sbjct 263591 GATTTTGGCCTTGACATTGTCAATGGTATCGGATGACTCCACCTCAAGGGTGATGGTCTT 263532
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| | || || ||||| || |||||
Sbjct 263531 GCCGGTGAGGGTCTTAACGAAGATCTGCAT 263502
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || |||||||| || ||||| |||||
Sbjct 263501 GCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGC 263442
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||||||||||| || ||||| |||||||||| ||||| || || ||
Sbjct 263441 AAGGGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 263382
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | ||||| | | ||||||
Sbjct 263381 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCAC 263322
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||||||||| | || || || || || |||||
Sbjct 263321 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 263274
>seq1
Length=4167794
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || || |||| || |||||||| || ||||| || |||
Sbjct 1162376 GCCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 1162435
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| ||| |||||||| || || ||| |||| || | ||||| || || ||
Sbjct 1162436 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 1162495
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715
||||| || ||||| ||| | || | || | | || | ||||||| | |||||
Sbjct 1162496 GATGCCCTCCTTGTCT-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCA 1162554
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| ||| | ||||| || || | || || ||||| ||||||||
Sbjct 1162555 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATTTGCAT 1162603
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || ||||| || || ||||| |||||
Sbjct 1162832 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTGC 1162891
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | |||||||||||| || || || |||| ||||| ||||| || || ||
Sbjct 1162892 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 1162951
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || ||| | | || | ||||||| | ||| ||
Sbjct 1162952 GATCCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 1163011
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||| || || | ||||| ||||| ||||||||
Sbjct 1163012 CTCGAGGGTGATGGTCTTTCCAGTAAGGGTTTTCACGAAGATTTGCAT 1163059
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||||| || ||||| || |||||||||||||| |
Sbjct 1161921 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCC 1161980
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || || || | ||| |||||||| |||||| | ||||| || |||||
Sbjct 1161981 AGGGTCCTTCCATCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1162040
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||| | | |||||||
Sbjct 1162041 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACC 1162100
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||| || ||||| || || || || || ||||||
Sbjct 1162101 TCCAAGGTGATGGTCTTCCCTGTCAAGGTCTTCACAAAGATCTGCATA 1162148
>seq15
Length=1624393
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| |||||||| || || || |||| || || |||||||||||||| ||||| || |||
Sbjct 1058142 TCCTCGAGCTGCTTCCCGGCGAAGATAAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTG 1058201
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||| ||||| | || |
Sbjct 1058202 TCCTGGATCTTAGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATG 1058261
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||||||| | ||||| ||||| || |||||
Sbjct 1058262 GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1058296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496050469854400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |