Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq202 156 6e-33 seq1330 149 9e-31 seq801 149 9e-31 seq8 131 2e-25 >seq202 Length=624202 Score = 156 bits (172), Expect = 6e-33 Identities = 300/437 (69%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || || |||||||| | Sbjct 31367 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 31426 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || |||||||||||||||||||| | |||| || ||| Sbjct 31427 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 31485 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || || || || ||||||||| || | || ||| | | ||| || | Sbjct 31486 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAG 31545 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || ||||| || || || Sbjct 31546 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCG 31602 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | || || | || || |||| | || Sbjct 31603 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 31662 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| |||||||| ||||| || |||||||| | ||| Sbjct 31663 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 31722 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| || || | ||| | |||| | ||||||| || || ||||| Sbjct 31723 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACAATGCCGTCG 31782 Query 50368 CTGGCTGCAAAAAACGC 50384 ||| || || || || Sbjct 31783 GAGGCAGCGAAGAAGGC 31799 >seq1330 Length=73179 Score = 149 bits (164), Expect = 9e-31 Identities = 389/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || || |||||||| | Sbjct 26770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 26711 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || |||||||||||||||||||| | |||| || ||| Sbjct 26710 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 26652 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || || || || ||||||||| || | || ||| | | ||| || | Sbjct 26651 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 26592 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 26591 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 26535 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | || || | || || |||| | || Sbjct 26534 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 26475 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| |||||||| ||||| || |||||||| | ||| Sbjct 26474 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 26415 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| || || | ||| | |||| | ||||||| || || || || Sbjct 26414 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 26355 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | | || | || || | ||| | | ||| Sbjct 26354 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCT 26295 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | ||| || | ||| || || || || | ||||| || |||||||| Sbjct 26294 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCG 26235 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| || ||||| | ||| || || | || ||||| || || ||| Sbjct 26234 GCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 26187 Score = 149 bits (164), Expect = 9e-31 Identities = 389/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || || |||||||| | Sbjct 46410 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 46469 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || |||||||||||||||||||| | |||| || ||| Sbjct 46470 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 46528 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || || || || ||||||||| || | || ||| | | ||| || | Sbjct 46529 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 46588 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 46589 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 46645 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | || || | || || |||| | || Sbjct 46646 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 46705 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| |||||||| ||||| || |||||||| | ||| Sbjct 46706 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 46765 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| || || | ||| | |||| | ||||||| || || || || Sbjct 46766 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 46825 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | | || | || || | ||| | | ||| Sbjct 46826 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCT 46885 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | ||| || | ||| || || || || | ||||| || |||||||| Sbjct 46886 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCG 46945 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| || ||||| | ||| || || | || ||||| || || ||| Sbjct 46946 GCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 46993 >seq801 Length=188201 Score = 149 bits (164), Expect = 9e-31 Identities = 389/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || || |||||||| | Sbjct 11771 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 11712 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || |||||||||||||||||||| | |||| || ||| Sbjct 11711 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 11653 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || || || || ||||||||| || | || ||| | | ||| || | Sbjct 11652 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 11593 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 11592 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 11536 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | || || | || || |||| | || Sbjct 11535 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 11476 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| |||||||| ||||| || |||||||| | ||| Sbjct 11475 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 11416 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| || || | ||| | |||| | ||||||| || || || || Sbjct 11415 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 11356 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | | || | || || | ||| | | ||| Sbjct 11355 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCT 11296 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | ||| || | ||| || || || || | ||||| || |||||||| Sbjct 11295 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCG 11236 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| || ||||| | ||| || || | || ||||| || || ||| Sbjct 11235 GCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 11188 >seq8 Length=1797525 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | |||| |||||||||||||||||| ||| || Sbjct 10363 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCC 10304 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| || || ||||| || || ||||||| || ||| || ||| Sbjct 10303 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 10244 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || ||| ||| || |||||||| || Sbjct 10243 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 10184 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| || || || ||||| Sbjct 10183 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | ||| |||||||| || || ||||| | ||||| || | Sbjct 10027 AGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGGTG 9968 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 || |||| ||| | || || ||||| | ||| ||||| || || | || | ||||| Sbjct 9967 ATATGTCTTGATAACAGAATCAATATCGTCCTTG-TGAATCCCAACAGAAACCCTCATTA 9909 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||| ||||||||||| || | |||| | | || || | |||||| | || | Sbjct 9908 GCATGTGTTGAGGTCTTTCCACAACCTTGCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 9849 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| || | || |||||| || || ||||| || Sbjct 9848 GAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 9800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249209218480