Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq202 156 6e-33
seq1330 149 9e-31
seq801 149 9e-31
seq8 131 2e-25
>seq202
Length=624202
Score = 156 bits (172), Expect = 6e-33
Identities = 300/437 (69%), Gaps = 8/437 (2%)
Strand=Plus/Plus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 31367 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 31426
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070
| || ||||| ||||||| || |||||||||||||||||||| | |||| || |||
Sbjct 31427 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 31485
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127
|| ||||| || || || || ||||||||| || | || ||| | | ||| || |
Sbjct 31486 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAG 31545
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| ||| ||||| | | ||||| | ||||||||| || ||||| || || ||
Sbjct 31546 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCG 31602
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 31603 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 31662
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|| ||||| || || || ||||| |||||||| ||||| || |||||||| | |||
Sbjct 31663 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 31722
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|||| | ||| || || | ||| | |||| | ||||||| || || |||||
Sbjct 31723 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACAATGCCGTCG 31782
Query 50368 CTGGCTGCAAAAAACGC 50384
||| || || || ||
Sbjct 31783 GAGGCAGCGAAGAAGGC 31799
>seq1330
Length=73179
Score = 149 bits (164), Expect = 9e-31
Identities = 389/588 (66%), Gaps = 8/588 (1%)
Strand=Plus/Minus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 26770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 26711
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070
| || ||||| ||||||| || |||||||||||||||||||| | |||| || |||
Sbjct 26710 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 26652
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127
|| ||||| || || || || ||||||||| || | || ||| | | ||| || |
Sbjct 26651 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 26592
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 26591 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 26535
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 26534 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 26475
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|| ||||| || || || ||||| |||||||| ||||| || |||||||| | |||
Sbjct 26474 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 26415
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|||| | ||| || || | ||| | |||| | ||||||| || || || ||
Sbjct 26414 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 26355
Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427
||| || || || || | | || | || || | ||| | | |||
Sbjct 26354 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCT 26295
Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487
| ||| | ||| || | ||| || || || || | ||||| || ||||||||
Sbjct 26294 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCG 26235
Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
||||| || ||||| | ||| || || | || ||||| || || |||
Sbjct 26234 GCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 26187
Score = 149 bits (164), Expect = 9e-31
Identities = 389/588 (66%), Gaps = 8/588 (1%)
Strand=Plus/Plus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 46410 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 46469
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070
| || ||||| ||||||| || |||||||||||||||||||| | |||| || |||
Sbjct 46470 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 46528
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127
|| ||||| || || || || ||||||||| || | || ||| | | ||| || |
Sbjct 46529 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 46588
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 46589 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 46645
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 46646 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 46705
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|| ||||| || || || ||||| |||||||| ||||| || |||||||| | |||
Sbjct 46706 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 46765
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|||| | ||| || || | ||| | |||| | ||||||| || || || ||
Sbjct 46766 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 46825
Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427
||| || || || || | | || | || || | ||| | | |||
Sbjct 46826 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCT 46885
Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487
| ||| | ||| || | ||| || || || || | ||||| || ||||||||
Sbjct 46886 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCG 46945
Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
||||| || ||||| | ||| || || | || ||||| || || |||
Sbjct 46946 GCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 46993
>seq801
Length=188201
Score = 149 bits (164), Expect = 9e-31
Identities = 389/588 (66%), Gaps = 8/588 (1%)
Strand=Plus/Minus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 11771 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 11712
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070
| || ||||| ||||||| || |||||||||||||||||||| | |||| || |||
Sbjct 11711 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 11653
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127
|| ||||| || || || || ||||||||| || | || ||| | | ||| || |
Sbjct 11652 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 11593
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 11592 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 11536
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 11535 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 11476
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|| ||||| || || || ||||| |||||||| ||||| || |||||||| | |||
Sbjct 11475 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 11416
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|||| | ||| || || | ||| | |||| | ||||||| || || || ||
Sbjct 11415 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCG 11356
Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427
||| || || || || | | || | || || | ||| | | |||
Sbjct 11355 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCT 11296
Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487
| ||| | ||| || | ||| || || || || | ||||| || ||||||||
Sbjct 11295 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCG 11236
Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
||||| || ||||| | ||| || || | || ||||| || || |||
Sbjct 11235 GCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 11188
>seq8
Length=1797525
Score = 131 bits (144), Expect = 2e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | || || | |||| |||||||||||||||||| ||| ||
Sbjct 10363 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCC 10304
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
|||||| || ||||| || || ||||| || || ||||||| || ||| || |||
Sbjct 10303 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 10244
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| ||||| || || ||| ||| | || ||| ||| || |||||||| ||
Sbjct 10243 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 10184
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
||| || ||||||||||| ||||| || || || |||||
Sbjct 10183 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142
Score = 86.0 bits (94), Expect = 9e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
|||||| | ||| || | ||| |||||||| || || ||||| | ||||| || |
Sbjct 10027 AGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGGTG 9968
Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452
|| |||| ||| | || || ||||| | ||| ||||| || || | || | |||||
Sbjct 9967 ATATGTCTTGATAACAGAATCAATATCGTCCTTG-TGAATCCCAACAGAAACCCTCATTA 9909
Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512
|||||| ||||||||||| || | |||| | | || || | |||||| | || |
Sbjct 9908 GCATGTGTTGAGGTCTTTCCACAACCTTGCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 9849
Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||| || || ||||| || | || |||||| || || ||||| ||
Sbjct 9848 GAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 9800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718249209218480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |