Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1330 205 1e-47 seq801 205 1e-47 seq202 205 1e-47 >seq1330 Length=73179 Score = 205 bits (226), Expect = 1e-47 Identities = 593/885 (67%), Gaps = 37/885 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | || || |||||||||||||| ||||| |||| ||||| | Sbjct 26189 TGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCT 26248 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | ||||| | | | | | Sbjct 26249 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTAT---CCG 26305 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | ||||||||| | |||||||| || | ||||||||| |||| Sbjct 26306 ACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCG 26365 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || || ||||| | || | | || | | ||| | ||| || | |||| || Sbjct 26366 TCCTTGAAAATCTCGCTGGGAGGTTTATGA-AGGAGGT--CCAGGTCGCCGAGGCC-CGC 26421 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| ||||||||| | ||||| || |||||| || Sbjct 26422 GCCTTCTACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTT 26481 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACA 125349 | || | |||||| || |||| ||| || ||| ||||| |||| ||||||| Sbjct 26482 CTCGAGACGTACATCAAGGACTCCG--ACGAGAAGCACCGCCTCTTCCACGCGATCGACA 26539 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| || |||| | | |||||||| | | | ||| Sbjct 26540 CCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGT 26599 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || || | ||||| || ||| ||| ||||| || ||||| ||||| | Sbjct 26600 CTTT---CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGA 26656 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || |||||||| || |||||||| | ||||| |||||||| | Sbjct 26657 GTTTCTGCG-CGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCC 26715 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCG 125587 |||||| | || || |||||||||||| | ||||| ||||| || | | |||| ||| Sbjct 26716 AACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC- 26774 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 ||| ||| | || | || | |||||| || ||| | || ||| | Sbjct 26775 --ACT-GCTGAG----GA-AGAAGCT-CAGCGAGGATCGGGTTAAGTCGATCGTACGGAA 26825 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG-GTCAGCATGATTGGCA 125706 || ||| ||| || ||||| | ||| | || ||| || || || | || | Sbjct 26826 CGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGC-TGGTGGGGA 26884 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || | || ||| || |||||| ||||| ||||| ||||| || ||| | || Sbjct 26885 TGAACGGCGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGT 26944 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA- 125825 || | |||||| ||||| | | |||| || || |||| ||| ||| |||| Sbjct 26945 TGGGATACGACAAGATGTACAATGTCCAGAACCCGTTCGATTGGATG--GAGCTGATCAG 27002 Query 125826 -CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||||||||| || |||||| ||| ||||||| Sbjct 27003 CCTGCAGGGGAAGACCAACTTCTTTGAGAAGCGCGTCGGCGAGTA 27047 Score = 205 bits (226), Expect = 1e-47 Identities = 593/885 (67%), Gaps = 37/885 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | || || |||||||||||||| ||||| |||| ||||| | Sbjct 46991 TGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCT 46932 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | ||||| | | | | | Sbjct 46931 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTAT---CCG 46875 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | ||||||||| | |||||||| || | ||||||||| |||| Sbjct 46874 ACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCG 46815 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || || ||||| | || | | || | | ||| | ||| || | |||| || Sbjct 46814 TCCTTGAAAATCTCGCTGGGAGGTTTATGA-AGGAGGT--CCAGGTCGCCGAGGCC-CGC 46759 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| ||||||||| | ||||| || |||||| || Sbjct 46758 GCCTTCTACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTT 46699 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACA 125349 | || | |||||| || |||| ||| || ||| ||||| |||| ||||||| Sbjct 46698 CTCGAGACGTACATCAAGGACTCCG--ACGAGAAGCACCGCCTCTTCCACGCGATCGACA 46641 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| || |||| | | |||||||| | | | ||| Sbjct 46640 CCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGT 46581 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || || | ||||| || ||| ||| ||||| || ||||| ||||| | Sbjct 46580 CTTT---CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGA 46524 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || |||||||| || |||||||| | ||||| |||||||| | Sbjct 46523 GTTTCTGCG-CGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCC 46465 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCG 125587 |||||| | || || |||||||||||| | ||||| ||||| || | | |||| ||| Sbjct 46464 AACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC- 46406 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 ||| ||| | || | || | |||||| || ||| | || ||| | Sbjct 46405 --ACT-GCTGAG----GA-AGAAGCT-CAGCGAGGATCGGGTTAAGTCGATCGTACGGAA 46355 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG-GTCAGCATGATTGGCA 125706 || ||| ||| || ||||| | ||| | || ||| || || || | || | Sbjct 46354 CGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGC-TGGTGGGGA 46296 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || | || ||| || |||||| ||||| ||||| ||||| || ||| | || Sbjct 46295 TGAACGGCGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGT 46236 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA- 125825 || | |||||| ||||| | | |||| || || |||| ||| ||| |||| Sbjct 46235 TGGGATACGACAAGATGTACAATGTCCAGAACCCGTTCGATTGGATG--GAGCTGATCAG 46178 Query 125826 -CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||||||||| || |||||| ||| ||||||| Sbjct 46177 CCTGCAGGGGAAGACCAACTTCTTTGAGAAGCGCGTCGGCGAGTA 46133 >seq801 Length=188201 Score = 205 bits (226), Expect = 1e-47 Identities = 593/885 (67%), Gaps = 37/885 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | || || |||||||||||||| ||||| |||| ||||| | Sbjct 11190 TGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCT 11249 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | ||||| | | | | | Sbjct 11250 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTAT---CCG 11306 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | ||||||||| | |||||||| || | ||||||||| |||| Sbjct 11307 ACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCG 11366 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || || ||||| | || | | || | | ||| | ||| || | |||| || Sbjct 11367 TCCTTGAAAATCTCGCTGGGAGGTTTATGA-AGGAGGT--CCAGGTCGCCGAGGCC-CGC 11422 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| ||||||||| | ||||| || |||||| || Sbjct 11423 GCCTTCTACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTT 11482 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACA 125349 | || | |||||| || |||| ||| || ||| ||||| |||| ||||||| Sbjct 11483 CTCGAGACGTACATCAAGGACTCCG--ACGAGAAGCACCGCCTCTTCCACGCGATCGACA 11540 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| || |||| | | |||||||| | | | ||| Sbjct 11541 CCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGT 11600 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || || | ||||| || ||| ||| ||||| || ||||| ||||| | Sbjct 11601 CTTT---CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGA 11657 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || |||||||| || |||||||| | ||||| |||||||| | Sbjct 11658 GTTTCTGCG-CGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCC 11716 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCG 125587 |||||| | || || |||||||||||| | ||||| ||||| || | | |||| ||| Sbjct 11717 AACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC- 11775 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 ||| ||| | || | || | |||||| || ||| | || ||| | Sbjct 11776 --ACT-GCTGAG----GA-AGAAGCT-CAGCGAGGATCGGGTTAAGTCGATCGTACGGAA 11826 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG-GTCAGCATGATTGGCA 125706 || ||| ||| || ||||| | ||| | || ||| || || || | || | Sbjct 11827 CGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGC-TGGTGGGGA 11885 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || | || ||| || |||||| ||||| ||||| ||||| || ||| | || Sbjct 11886 TGAACGGCGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGT 11945 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA- 125825 || | |||||| ||||| | | |||| || || |||| ||| ||| |||| Sbjct 11946 TGGGATACGACAAGATGTACAATGTCCAGAACCCGTTCGATTGGATG--GAGCTGATCAG 12003 Query 125826 -CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||||||||| || |||||| ||| ||||||| Sbjct 12004 CCTGCAGGGGAAGACCAACTTCTTTGAGAAGCGCGTCGGCGAGTA 12048 >seq202 Length=624202 Score = 205 bits (226), Expect = 1e-47 Identities = 593/885 (67%), Gaps = 37/885 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | || || |||||||||||||| ||||| |||||||||| | Sbjct 31948 TGTTTCCGATCCAGTACCCAGAAATATGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCT 31889 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | ||||| | | | | | Sbjct 31888 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCAGTGGGAAGCCCTAT---CCG 31832 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | ||||||||| | |||||||| || | |||||| || || | Sbjct 31831 ACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATTG 31772 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || || ||||| | || | | || | | ||| | ||| || | |||| || Sbjct 31771 TCCTTGAAAATCTCGCTGGGAGGTTTATGA-AGGAGGT--CCAGGTCGCCGAGGCC-CGC 31716 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| ||||||||| | ||||| || |||||| || Sbjct 31715 GCCTTCTACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTT 31656 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACA 125349 | || | |||||| || |||| ||| || ||| ||||| |||| ||||||| Sbjct 31655 CTCGAGACGTACATCAAGGACTCCG--ACGAGAAGCACCGCCTCTTCCACGCGATCGACA 31598 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| || |||| | | |||||||| | | | ||| Sbjct 31597 CCATCCCTTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGT 31538 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || || | || || || ||| ||| ||||| || ||||| ||||| | Sbjct 31537 CTTT---CGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGA 31481 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || |||||||| || |||||||| | ||||| |||||||| | Sbjct 31480 GTTTCTGCG-CGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCC 31422 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCG 125587 |||||| | || || |||||||||||| | ||||| ||||| || | | |||| ||| Sbjct 31421 AACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC- 31363 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 ||| ||| | || | || | ||||| || ||| || || ||| | Sbjct 31362 --ACT-GCTGAG----GA-AGAAGCT-GAGCGAGGATCGGGTGATGTCGATCGTACGGAA 31312 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG-GTCAGCATGATTGGCA 125706 || ||| ||| || |||||| | ||| | || ||| || || || | || | Sbjct 31311 CGCGGTGGAGATCGAGAGAGAGTTCGTGTGCGACGCGCTGCCGTGTGCGC-TGGTGGGGA 31253 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || | || ||| || |||||| ||||| ||||| ||||| || ||| | || Sbjct 31252 TGAACGGCGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGT 31193 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA- 125825 || | ||||||| ||||| | | |||| ||||| || | ||| ||| |||| Sbjct 31192 TGGGATACGGCAAGATGTACAATGTCCAGAACCCCTTCGACTGGATG--GAGCTGATCAG 31135 Query 125826 -CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||||||||| || |||||| ||| ||||||| Sbjct 31134 CCTGCAGGGGAAGACCAACTTCTTTGAGAAGCGCGTCGGCGAGTA 31090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038987610320