Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq687 100 2e-16 seq59 100 2e-16 seq15 86.0 5e-12 seq580 84.2 2e-11 seq54 84.2 2e-11 >seq687 Length=229775 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || ||||| |||||||| || || | || | || || Sbjct 53780 ACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGTGTCCTTCCATCCTCG 53721 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | ||||||||| ||||| || || ||||| Sbjct 53720 AGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 53661 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || || ||||| | |||| || || | |||||||||||| Sbjct 53660 ATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACTTCCAGGGTAATGGTTTTC 53601 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| ||||||||| Sbjct 53600 CCAGTCAAGGTCTTCACAAAGATTTGCATA 53571 >seq59 Length=1152742 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || ||||| |||||||| || || | || | || || Sbjct 731261 ACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGTGTCCTTCCATCCTCG 731202 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | ||||||||| ||||| || || ||||| Sbjct 731201 AGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 731142 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || || ||||| | |||| || || | |||||||||||| Sbjct 731141 ATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACTTCCAGGGTAATGGTTTTC 731082 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| ||||||||| Sbjct 731081 CCAGTCAAGGTCTTCACAAAGATTTGCATA 731052 >seq15 Length=1624393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || || || | || || || ||||| ||||||||||| Sbjct 1075059 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 1075118 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | || |||| || ||||| || |||||| | ||||| | || | ||| || Sbjct 1075119 CCAATGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTAGTCTGGTG 1075178 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| || || || || ||| ||| ||| | || |||||||| | || | Sbjct 1075179 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 1075238 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | ||||| || || || || || ||||| |||||||| |||||| Sbjct 1075239 CCTCGAGAGTAATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 1075288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| || | ||| || || | || || || ||||| ||||||||||| Sbjct 1057613 CCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 1057672 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTC-GTTTGG 15255 ||| | || | || || ||||| || ||||| | || || | || ||||| | || Sbjct 1057673 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGGGGG 1057732 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||| || || || || ||||| ||| || | || || ||||| | |||| | Sbjct 1057733 GATTCCCTCCTTATCTTGGATCTTTGC-CTTGACGTTATCGATCGTATCAGAACTTTCGA 1057791 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || ||||| || || || ||||| ||||| ||||| || |||||| Sbjct 1057792 CCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCATA 1057841 >seq580 Length=281551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | || | || || || || Sbjct 200737 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTTCCATCCTCCAACTGC 200678 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| | ||||| | || ||||| || || ||||| ||||| || ||| Sbjct 200677 TTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTT 200618 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| || | || || || ||||| ||||| || ||||| Sbjct 200617 GC-CTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 200559 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 200558 CAAGGTCTTCACGAAGATCTGCATA 200534 >seq54 Length=1192742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | || | || || || || Sbjct 264388 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTTCCATCCTCCAACTGC 264329 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| | ||||| | || ||||| || || ||||| ||||| || ||| Sbjct 264328 TTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTT 264269 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| || | || || || ||||| ||||| || ||||| Sbjct 264268 GC-CTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 264210 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 264209 CAAGGTCTTCACGAAGATCTGCATA 264185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362169568523262