Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq15 95.1 1e-14 seq687 89.7 4e-13 seq59 89.7 4e-13 >seq15 Length=1624393 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| |||||||||||||| || ||||||||||||| ||| | |||||||| Sbjct 1075079 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCGCCAATGTCCTTCCGTCCTCC 1075138 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| || |||| | |||||||| || || | ||||| || || Sbjct 1075139 AATTGCTTACCAGCGAAAATCAATCTCTGCTAGTCTGGTGGGATTCCCTCCTTATCCTGG 1075198 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTT 19009 || || || || | ||| |||| ||| |||| || |||| ||||| || Sbjct 1075199 ATCTTGGCCTTCACATTATCGATGGTAT---CAGAGCTCTCGACCTCGAGAGTAATTGTC 1075255 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||| |||||||||||||| ||||| Sbjct 1075256 TTCCCCGTTAGGGTTTTGACAAAAATCTGCAT 1075287 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||| | ||| | || |||||||| || || |||||||||||| Sbjct 1057385 CCACCGCGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1057444 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||||| ||| || || ||| ||||||| ||||||||||| || Sbjct 1057445 AGGGTCCTGCCATCCTCCAACTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCTGGAGGA 1057504 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||| ||| || || | | | ||||| | |||| Sbjct 1057505 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACGTTATCTATGGTATCTGAACTCTCCACC 1057564 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || | || || |||||||| ||||| Sbjct 1057565 TCCAGAGTGATAGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 1057611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||||||||| || ||||||||||| | || || | |||||| Sbjct 1057631 ACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTGCCATCCTCC 1057690 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | || ||||| ||| |||| | ||||||||| || Sbjct 1057691 AATTGCTTACCAGCAAAAATTAATCTCTGCTGGTC 1057725 >seq687 Length=229775 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||||||||| | || | ||||||||||||| ||||| Sbjct 53996 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTCCCGTCCTCCAGCTGCTTACCG 53937 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| | || || |||||||| ||| || | |||||| ||||| Sbjct 53936 GCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 53893 >seq59 Length=1152742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||||||||| | || | ||||||||||||| ||||| Sbjct 731477 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTCCCGTCCTCCAGCTGCTTACCG 731418 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| | || || |||||||| ||| || | |||||| ||||| Sbjct 731417 GCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 731374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414561775213708