Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq15 95.1 1e-14
seq687 89.7 4e-13
seq59 89.7 4e-13
>seq15
Length=1624393
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| |||||| |||||||||||||| || ||||||||||||| ||| | ||||||||
Sbjct 1075079 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCGCCAATGTCCTTCCGTCCTCC 1075138
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
| || ||||| || |||| | |||||||| || || | ||||| || ||
Sbjct 1075139 AATTGCTTACCAGCGAAAATCAATCTCTGCTAGTCTGGTGGGATTCCCTCCTTATCCTGG 1075198
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTT 19009
|| || || || | ||| |||| ||| |||| || |||| ||||| ||
Sbjct 1075199 ATCTTGGCCTTCACATTATCGATGGTAT---CAGAGCTCTCGACCTCGAGAGTAATTGTC 1075255
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || |||| |||||||||||||| |||||
Sbjct 1075256 TTCCCCGTTAGGGTTTTGACAAAAATCTGCAT 1075287
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || || | ||| | ||| | ||| | || |||||||| || || ||||||||||||
Sbjct 1057385 CCACCGCGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1057444
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || || | ||||||| ||| || || ||| ||||||| ||||||||||| ||
Sbjct 1057445 AGGGTCCTGCCATCCTCCAACTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCTGGAGGA 1057504
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| |||||| ||||| ||| ||| || || | | | ||||| | ||||
Sbjct 1057505 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACGTTATCTATGGTATCTGAACTCTCCACC 1057564
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || || || || || || | || || |||||||| |||||
Sbjct 1057565 TCCAGAGTGATAGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 1057611
Score = 82.4 bits (90), Expect = 6e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| |||||| || ||||||||||| || ||||||||||| | || || | ||||||
Sbjct 1057631 ACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTGCCATCCTCC 1057690
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927
| || ||||| ||| |||| | ||||||||| ||
Sbjct 1057691 AATTGCTTACCAGCAAAAATTAATCTCTGCTGGTC 1057725
>seq687
Length=229775
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|||||||||||||| || ||||||||||| | || | ||||||||||||| |||||
Sbjct 53996 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTCCCGTCCTCCAGCTGCTTACCG 53937
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||| | || || |||||||| ||| || | |||||| |||||
Sbjct 53936 GCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 53893
>seq59
Length=1152742
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|||||||||||||| || ||||||||||| | || | ||||||||||||| |||||
Sbjct 731477 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTCCCGTCCTCCAGCTGCTTACCG 731418
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||| | || || |||||||| ||| || | |||||| |||||
Sbjct 731417 GCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 731374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414561775213708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |