Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq100 100 2e-16 seq580 95.1 1e-14 seq54 95.1 1e-14 seq139 93.3 4e-14 seq1309 91.5 1e-13 seq281 91.5 1e-13 seq1 91.5 1e-13 seq15 89.7 4e-13 seq146 87.8 2e-12 seq687 84.2 2e-11 seq59 84.2 2e-11 >seq100 Length=933141 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||||| || ||| | |||||||||||||||| ||| || Sbjct 405002 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGA 404944 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 404943 AGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 404884 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| |||||| ||| | ||||| || || || || || ||||||| Sbjct 404883 TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 404824 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 404823 CGAAGATCTGCATC 404810 >seq580 Length=281551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || ||||||||| |||||||| || || | ||| | || || Sbjct 199604 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 199545 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | ||||||||| ||| || | | |||||||||| Sbjct 199544 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 199485 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | |||||| ||||| || ||||| Sbjct 199484 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTC 199427 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||||||||| || || |||||| Sbjct 199426 TTGCCGGTAAGAGTTTTCACGAAGATTTGCATC 199394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| |||||| |||||||||||||||||| | ||| | | ||||||| ||| Sbjct 200737 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC-AGGGTCCTTCCATCCTCCAACTG 200679 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || |||| || | |||||| ||| || | | |||||||||| || || Sbjct 200678 CTTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 200619 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | |||| ||| | || ||||| || || || Sbjct 200618 TGCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 200559 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 200558 CAAGGTCTTCACGAAGATCTGCAT 200535 >seq54 Length=1192742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || ||||||||| |||||||| || || | ||| | || || Sbjct 263255 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 263196 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | ||||||||| ||| || | | |||||||||| Sbjct 263195 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 263136 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | |||||| ||||| || ||||| Sbjct 263135 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTC 263078 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||||||||| || || |||||| Sbjct 263077 TTGCCGGTAAGAGTTTTCACGAAGATTTGCATC 263045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| |||||| |||||||||||||||||| | ||| | | ||||||| ||| Sbjct 264388 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC-AGGGTCCTTCCATCCTCCAACTG 264330 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || |||| || | |||||| ||| || | | |||||||||| || || Sbjct 264329 CTTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 264270 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | |||| ||| | || ||||| || || || Sbjct 264269 TGCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 264210 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 264209 CAAGGTCTTCACGAAGATCTGCAT 264186 >seq139 Length=803459 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| ||||||| || |||| || |||||||| ||| || | | Sbjct 751893 CCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGA 751952 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | |||||||| ||| ||| | | ||||||||| || || ||||| | Sbjct 751953 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 752012 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||||| ||| | ||| ||||| || ||||| || ||||| || |||||||| | Sbjct 752013 CGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 752072 Query 48717 AAATCTGCATC 48727 ||||||||||| Sbjct 752073 AAATCTGCATC 752083 >seq1309 Length=78448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| ||||||| || |||| || |||||||| ||| || | Sbjct 62322 CCTTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAG 62381 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| ||| ||| | | ||||||||| || || ||||| | Sbjct 62382 ATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 62441 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | ||| ||||| || ||||| || ||||| || |||||||| Sbjct 62442 TCAATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTTCACG 62501 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 62502 AAAATCTGCATC 62513 >seq281 Length=531459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || ||| | |||||||||||||||| ||| || Sbjct 453568 CTCCTTCTGGATGTTGTAGTCGGC-AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGA 453510 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 453509 AGATGAGTCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 453450 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | |||||| ||| | ||||| || || || || || ||||||| Sbjct 453449 TGTCGATGGTGTCTGAAGACTCAACCTCCAGAGTTATCGTCTTCCCCGTTAGGGTTTTCA 453390 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 453389 CGAAGATCTGCATC 453376 >seq1 Length=4167794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| || ||||||||||| || | ||| |||| || Sbjct 1162850 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTGCGAGGGTTCGGCCGTCTTC 1162909 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | ||||||||| || || | | |||||||||| Sbjct 1162910 GAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTG 1162969 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || |||| | | || ||||| |||| |||||| ||||| || ||||| Sbjct 1162970 GATCTTGGCTTTGACGTTGTCG--ATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 1163027 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || |||||||| || || |||||| Sbjct 1163028 TTTCCAGTAAGGGTTTTCACGAAGATTTGCATC 1163060 >seq15 Length=1624393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| | ||| | ||||| || |||||| || ||||||||||| || Sbjct 1057384 ACCACCGCGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 1057443 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 || ||| || | ||||||| |||||| ||| | |||| | | ||||||||| Sbjct 1057444 CAGG-GTC-CTGCCATCCTCCAACTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCTGGA 1057501 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | |||||||| ||| ||| ||| | |||||||||| | | |||| Sbjct 1057502 GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACGTTATCTATGGTATCTGAACTCTCC 1057561 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || || || ||||||||||||||||| Sbjct 1057562 ACCTCCAGAGTGATAGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 1057611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||| ||||||||||| ||||| |||| | ||||||||| |||||||| || Sbjct 1075096 CTCCTTTTGGATGTTGTAATCCGCCAA-TGTCCTTCCGTCCTCCAATTGCTTACCAGCGA 1075154 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| || | ||||| || || | | ||||| ||| || || ||| | | Sbjct 1075155 AAATCAATCTCTGCTAGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACAT 1075214 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||| | ||| ||||| || || || || || || || ||||| | Sbjct 1075215 TATCGATGGTATCAGAGCTCTCGACCTCGAGAGTAATTGTCTTCCCCGTTAGGGTTTTGA 1075274 Query 48714 CAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 ||||||||||||| | |||| |||| |||| Sbjct 1075275 CAAAAATCTGCATACCTCCTCTTAATCGCAGAA 1075307 >seq146 Length=786261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 97598 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAA 97539 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | ||||||||| || || ||| | | Sbjct 97538 GATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 97479 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||| | ||||| || || || || || |||||||| Sbjct 97478 GTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 97419 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 97418 GAAGATCTGCATC 97406 >seq687 Length=229775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582 ||||| || ||||||||| ||||||||||| || || ||| | ||||||||||||| Sbjct 54002 TGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGC-AAGGGTCCTCCCGTCCTCCAGCTG 53944 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || | | |||||| ||| || | | ||||||||| || || Sbjct 53943 CTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 53884 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | |||||||| | | ||| || | |||||| || || || || Sbjct 53883 TGCCTTCACATTATCAATGGTATCAGAACTCTCTACTTCCAATGTTATTGTCTTCCCAGT 53824 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||| ||||||||| Sbjct 53823 CAATGTCTTCACAAAGATCTGCATC 53799 >seq59 Length=1152742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582 ||||| || ||||||||| ||||||||||| || || ||| | ||||||||||||| Sbjct 731483 TGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGC-AAGGGTCCTCCCGTCCTCCAGCTG 731425 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || | | |||||| ||| || | | ||||||||| || || Sbjct 731424 CTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 731365 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | |||||||| | | ||| || | |||||| || || || || Sbjct 731364 TGCCTTCACATTATCAATGGTATCAGAACTCTCTACTTCCAATGTTATTGTCTTCCCAGT 731305 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||| ||||||||| Sbjct 731304 CAATGTCTTCACAAAGATCTGCATC 731280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239997614182