Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq100 100 2e-16
seq580 95.1 1e-14
seq54 95.1 1e-14
seq139 93.3 4e-14
seq1309 91.5 1e-13
seq281 91.5 1e-13
seq1 91.5 1e-13
seq15 89.7 4e-13
seq146 87.8 2e-12
seq687 84.2 2e-11
seq59 84.2 2e-11
>seq100
Length=933141
Score = 100 bits (110), Expect = 2e-16
Identities = 140/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || |||||||| ||||| || ||| | |||||||||||||||| ||| ||
Sbjct 405002 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGA 404944
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || | |||||||| ||| ||| | | ||||||||| || || ||| | |
Sbjct 404943 AGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 404884
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| ||||| |||| |||||| ||| | ||||| || || || || || |||||||
Sbjct 404883 TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 404824
Query 48714 CAAAAATCTGCATC 48727
| || |||||||||
Sbjct 404823 CGAAGATCTGCATC 404810
>seq580
Length=281551
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || || ||||||||| |||||||| || || | ||| | || ||
Sbjct 199604 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 199545
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || || | || | ||||||||| ||| || | | ||||||||||
Sbjct 199544 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 199485
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||||| | | || ||||| || | |||||| ||||| || |||||
Sbjct 199484 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTC 199427
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||||| ||||||||||| || || ||||||
Sbjct 199426 TTGCCGGTAAGAGTTTTCACGAAGATTTGCATC 199394
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582
||||| ||| |||||| |||||||||||||||||| | ||| | | ||||||| |||
Sbjct 200737 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC-AGGGTCCTTCCATCCTCCAACTG 200679
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || || |||| || | |||||| ||| || | | |||||||||| || ||
Sbjct 200678 CTTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 200619
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | ||||| || | |||| ||| | || ||||| || || ||
Sbjct 200618 TGCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 200559
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
| || ||||| || ||||||||
Sbjct 200558 CAAGGTCTTCACGAAGATCTGCAT 200535
>seq54
Length=1192742
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || || ||||||||| |||||||| || || | ||| | || ||
Sbjct 263255 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 263196
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || || | || | ||||||||| ||| || | | ||||||||||
Sbjct 263195 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 263136
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||||| | | || ||||| || | |||||| ||||| || |||||
Sbjct 263135 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTC 263078
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||||| ||||||||||| || || ||||||
Sbjct 263077 TTGCCGGTAAGAGTTTTCACGAAGATTTGCATC 263045
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582
||||| ||| |||||| |||||||||||||||||| | ||| | | ||||||| |||
Sbjct 264388 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC-AGGGTCCTTCCATCCTCCAACTG 264330
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || || |||| || | |||||| ||| || | | |||||||||| || ||
Sbjct 264329 CTTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 264270
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | ||||| || | |||| ||| | || ||||| || || ||
Sbjct 264269 TGCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGT 264210
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
| || ||||| || ||||||||
Sbjct 264209 CAAGGTCTTCACGAAGATCTGCAT 264186
>seq139
Length=803459
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596
|||| || |||||||| ||||||| || |||| || |||||||| ||| || | |
Sbjct 751893 CCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGA 751952
Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656
| | |||||||| ||| ||| | | ||||||||| || || ||||| |
Sbjct 751953 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 752012
Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716
| ||||| ||| | ||| ||||| || ||||| || ||||| || |||||||| |
Sbjct 752013 CGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 752072
Query 48717 AAATCTGCATC 48727
|||||||||||
Sbjct 752073 AAATCTGCATC 752083
>seq1309
Length=78448
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/192 (71%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| || |||||||| ||||||| || |||| || |||||||| ||| || |
Sbjct 62322 CCTTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAG 62381
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| | |||||||| ||| ||| | | ||||||||| || || ||||| |
Sbjct 62382 ATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 62441
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
| ||||| ||| | ||| ||||| || ||||| || ||||| || ||||||||
Sbjct 62442 TCAATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTTCACG 62501
Query 48716 AAAATCTGCATC 48727
||||||||||||
Sbjct 62502 AAAATCTGCATC 62513
>seq281
Length=531459
Score = 91.5 bits (100), Expect = 1e-13
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || |||||||| || || || ||| | |||||||||||||||| ||| ||
Sbjct 453568 CTCCTTCTGGATGTTGTAGTCGGC-AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGA 453510
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || | |||||||| ||| ||| | | ||||||||| || || ||| | |
Sbjct 453509 AGATGAGTCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 453450
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| ||||| || | |||||| ||| | ||||| || || || || || |||||||
Sbjct 453449 TGTCGATGGTGTCTGAAGACTCAACCTCCAGAGTTATCGTCTTCCCCGTTAGGGTTTTCA 453390
Query 48714 CAAAAATCTGCATC 48727
| || |||||||||
Sbjct 453389 CGAAGATCTGCATC 453376
>seq1
Length=4167794
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || || |||||| || ||||||||||| || | ||| |||| ||
Sbjct 1162850 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTGCGAGGGTTCGGCCGTCTTC 1162909
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| ||| || | || | ||||||||| || || | | ||||||||||
Sbjct 1162910 GAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTG 1162969
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || |||| | | || ||||| |||| |||||| ||||| || |||||
Sbjct 1162970 GATCTTGGCTTTGACGTTGTCG--ATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 1163027
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| || || || |||||||| || || ||||||
Sbjct 1163028 TTTCCAGTAAGGGTTTTCACGAAGATTTGCATC 1163060
>seq15
Length=1624393
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||| | ||| | ||| | ||||| || |||||| || ||||||||||| ||
Sbjct 1057384 ACCACCGCGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 1057443
Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616
|| ||| || | ||||||| |||||| ||| | |||| | | |||||||||
Sbjct 1057444 CAGG-GTC-CTGCCATCCTCCAACTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCTGGA 1057501
Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676
|| | | |||||||| ||| ||| ||| | |||||||||| | | ||||
Sbjct 1057502 GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACGTTATCTATGGTATCTGAACTCTCC 1057561
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || || || || || || || |||||||||||||||||
Sbjct 1057562 ACCTCCAGAGTGATAGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 1057611
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGT 48593
||||||||| ||||||||||| ||||| |||| | ||||||||| |||||||| ||
Sbjct 1075096 CTCCTTTTGGATGTTGTAATCCGCCAA-TGTCCTTCCGTCCTCCAATTGCTTACCAGCGA 1075154
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
|||| || | ||||| || || | | ||||| ||| || || ||| | |
Sbjct 1075155 AAATCAATCTCTGCTAGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACAT 1075214
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| |||||||| | ||| ||||| || || || || || || || ||||| |
Sbjct 1075215 TATCGATGGTATCAGAGCTCTCGACCTCGAGAGTAATTGTCTTCCCCGTTAGGGTTTTGA 1075274
Query 48714 CAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744
||||||||||||| | |||| |||| ||||
Sbjct 1075275 CAAAAATCTGCATACCTCCTCTTAATCGCAGAA 1075307
>seq146
Length=786261
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || || | || |||||||||||||||| ||| || |
Sbjct 97598 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAA 97539
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||||| ||| || | | ||||||||| || || ||| | |
Sbjct 97538 GATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 97479
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| |||| |||||| ||| | ||||| || || || || || ||||||||
Sbjct 97478 GTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 97419
Query 48715 AAAAATCTGCATC 48727
|| |||||||||
Sbjct 97418 GAAGATCTGCATC 97406
>seq687
Length=229775
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582
||||| || ||||||||| ||||||||||| || || ||| | |||||||||||||
Sbjct 54002 TGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGC-AAGGGTCCTCCCGTCCTCCAGCTG 53944
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||||||| | | || | | |||||| ||| || | | ||||||||| || ||
Sbjct 53943 CTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 53884
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | |||||||| | | ||| || | |||||| || || || ||
Sbjct 53883 TGCCTTCACATTATCAATGGTATCAGAACTCTCTACTTCCAATGTTATTGTCTTCCCAGT 53824
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
| || |||||||| |||||||||
Sbjct 53823 CAATGTCTTCACAAAGATCTGCATC 53799
>seq59
Length=1152742
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582
||||| || ||||||||| ||||||||||| || || ||| | |||||||||||||
Sbjct 731483 TGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGC-AAGGGTCCTCCCGTCCTCCAGCTG 731425
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||||||| | | || | | |||||| ||| || | | ||||||||| || ||
Sbjct 731424 CTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 731365
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | |||||||| | | ||| || | |||||| || || || ||
Sbjct 731364 TGCCTTCACATTATCAATGGTATCAGAACTCTCTACTTCCAATGTTATTGTCTTCCCAGT 731305
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
| || |||||||| |||||||||
Sbjct 731304 CAATGTCTTCACAAAGATCTGCATC 731280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421239997614182
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