Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq624 114 7e-21
seq234 109 3e-19
seq345 107 1e-18
seq868 105 3e-18
seq299 105 3e-18
seq286 105 3e-18
seq105 104 1e-17
seq13 104 1e-17
seq261 102 4e-17
seq17 102 4e-17
seq361 98.7 5e-16
seq349 98.7 5e-16
seq3 95.1 6e-15
seq1 95.1 6e-15
>seq624
Length=264415
Score = 114 bits (126), Expect = 7e-21
Identities = 76/85 (89%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||||||||||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 37401 AAAAAACAAATTGGCCCATGCAGGTTTCGAACCATCGACCTTCGCGTTATTAGCACGACG 37460
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||||| ||||
Sbjct 37461 CTCTAACCAGCTGAGCTAATAGGCC 37485
Score = 114 bits (126), Expect = 7e-21
Identities = 76/85 (89%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||||||||||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 227015 AAAAAACAAATTGGCCCATGCAGGTTTCGAACCATCGACCTTCGCGTTATTAGCACGACG 226956
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||||| ||||
Sbjct 226955 CTCTAACCAGCTGAGCTAATAGGCC 226931
>seq234
Length=583192
Score = 109 bits (120), Expect = 3e-19
Identities = 81/95 (85%), Gaps = 4/95 (4%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||
Sbjct 420516 AATTTATAAAAAAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 420461
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
|| ||||||||| |||| |||||||||| ||||||
Sbjct 420460 GCCCGACGCTCTAACCAGCTGAGCTAATAGGCCGT 420426
>seq345
Length=458610
Score = 107 bits (118), Expect = 1e-18
Identities = 76/88 (86%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 122884 AAAAACTAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 122825
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532
||| |||| |||||||||| |||| ||
Sbjct 122824 ATCTAACCAGCTGAGCTAATAGGCCATC 122797
>seq868
Length=168375
Score = 105 bits (116), Expect = 3e-18
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| || |||| | ||| ||||||||| | | |||||||| |||||||||||||||
Sbjct 69164 AGAAAGAAGAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 69105
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| |||| |||||||||| ||||
Sbjct 69104 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 69070
>seq299
Length=506063
Score = 105 bits (116), Expect = 3e-18
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
||||| ||||||||| ||||||||| | | |||||||| |||||||||||||||
Sbjct 296598 AGAATAAATAAAAAAA-----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 296544
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| |||| |||||||||| ||||
Sbjct 296543 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 296509
>seq286
Length=524517
Score = 105 bits (116), Expect = 3e-18
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| | |||||||||||| | | |||||||| |||||||||||||||||||||| ||
Sbjct 264957 AAAAAACTAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGCCG 265016
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||||| ||||
Sbjct 265017 CTCTAACCAGCTGAGCTAATAGGCC 265041
>seq105
Length=925015
Score = 104 bits (114), Expect = 1e-17
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||| || | || | ||| ||||||||||||| | | |||||||| |||||||||
Sbjct 321309 AAATAATGACTAAAAAGAAAGGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 321250
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||| |||||| |||| |||||||||| ||||
Sbjct 321249 CGTTATTAGCACGGCGCTCTAACCAGCTGAGCTAATAGGCC 321209
>seq13
Length=1673325
Score = 104 bits (114), Expect = 1e-17
Identities = 84/101 (83%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||| | || ||| |||| |||| |||||||| | | |||||||| |||||||||
Sbjct 768552 AAATAAAAAAAAAATTGAAAAAAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 768610
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| |||| |||||||||| ||||
Sbjct 768611 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 768651
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 1542442 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1542501
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 1542502 TGAGCTAATAGGCC 1542515
>seq261
Length=546652
Score = 102 bits (112), Expect = 4e-17
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| || |||| | ||| ||||||||| | | |||||||| |||||||||||||||
Sbjct 399134 AGAAAGAAGAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 399075
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||| |||| |||||||||| ||||
Sbjct 399074 TAGCACGCCGCTCTAACCAGCTGAGCTAATAGGCC 399040
Score = 96.9 bits (106), Expect = 2e-15
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| || |||| | ||| ||||||||| | | |||||||| |||||||||||||||
Sbjct 247314 AGAAAGAAGAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 247373
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| | |||| |||||||||| ||||
Sbjct 247374 TAGCACGACGCCCCAACCAGCTGAGCTAATAGGCC 247408
>seq17
Length=1563720
Score = 102 bits (112), Expect = 4e-17
Identities = 75/88 (85%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||||| | ||| ||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 311174 TAAAACAAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 311115
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530
||| || |||| |||||||||| |||||
Sbjct 311114 CGCGCTAACCAGCTGAGCTAATAGGCCG 311087
>seq361
Length=447752
Score = 98.7 bits (108), Expect = 5e-16
Identities = 73/85 (86%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| |||||||||| | | |||||||| ||||||||||||||||||| || ||
Sbjct 44922 AAAAAACAA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCTCGCCG 44864
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||||| ||||
Sbjct 44863 CTCTAACCAGCTGAGCTAATAGGCC 44839
>seq349
Length=455556
Score = 98.7 bits (108), Expect = 5e-16
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| |||||||||||||||||||||| |||||| ||
Sbjct 189244 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGCCGCTCTAAC 189185
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 189184 CAGCTGAGCTAATAGGCC 189167
>seq3
Length=3914344
Score = 95.1 bits (104), Expect = 6e-15
Identities = 73/86 (85%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||| ||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 2629849 AAAAAGGAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 2629907
Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530
|||| |||| |||||||||| |||||
Sbjct 2629908 CTCTAACCAGCTGAGCTAATAGGCCG 2629933
>seq1
Length=4167794
Score = 95.1 bits (104), Expect = 6e-15
Identities = 73/86 (85%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||| ||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 3675652 AAAAAAGAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 3675594
Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530
|||| |||| |||||||||| |||||
Sbjct 3675593 CTCTAACCAGCTGAGCTAATAGGCCG 3675568
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261484246131832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |