Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq624 114 7e-21 seq234 109 3e-19 seq345 107 1e-18 seq868 105 3e-18 seq299 105 3e-18 seq286 105 3e-18 seq105 104 1e-17 seq13 104 1e-17 seq261 102 4e-17 seq17 102 4e-17 seq361 98.7 5e-16 seq349 98.7 5e-16 seq3 95.1 6e-15 seq1 95.1 6e-15 >seq624 Length=264415 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||||||||||||| | | ||||||| |||||||||||||||||||||||||| Sbjct 37401 AAAAAACAAATTGGCCCATGCAGGTTTCGAACCATCGACCTTCGCGTTATTAGCACGACG 37460 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 37461 CTCTAACCAGCTGAGCTAATAGGCC 37485 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||||||||||||| | | ||||||| |||||||||||||||||||||||||| Sbjct 227015 AAAAAACAAATTGGCCCATGCAGGTTTCGAACCATCGACCTTCGCGTTATTAGCACGACG 226956 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 226955 CTCTAACCAGCTGAGCTAATAGGCC 226931 >seq234 Length=583192 Score = 109 bits (120), Expect = 3e-19 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||||| |||||||||| | | |||||||| ||||||||||||||||| Sbjct 420516 AATTTATAAAAAAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 420461 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 || ||||||||| |||| |||||||||| |||||| Sbjct 420460 GCCCGACGCTCTAACCAGCTGAGCTAATAGGCCGT 420426 >seq345 Length=458610 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 122884 AAAAACTAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 122825 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||| |||| |||||||||| |||| || Sbjct 122824 ATCTAACCAGCTGAGCTAATAGGCCATC 122797 >seq868 Length=168375 Score = 105 bits (116), Expect = 3e-18 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || |||| | ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 69164 AGAAAGAAGAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 69105 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 69104 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 69070 >seq299 Length=506063 Score = 105 bits (116), Expect = 3e-18 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| ||||||||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 296598 AGAATAAATAAAAAAA-----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 296544 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 296543 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 296509 >seq286 Length=524517 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | |||||||||||| | | |||||||| |||||||||||||||||||||| || Sbjct 264957 AAAAAACTAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGCCG 265016 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 265017 CTCTAACCAGCTGAGCTAATAGGCC 265041 >seq105 Length=925015 Score = 104 bits (114), Expect = 1e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| || | || | ||| ||||||||||||| | | |||||||| ||||||||| Sbjct 321309 AAATAATGACTAAAAAGAAAGGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 321250 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||| |||| |||||||||| |||| Sbjct 321249 CGTTATTAGCACGGCGCTCTAACCAGCTGAGCTAATAGGCC 321209 >seq13 Length=1673325 Score = 104 bits (114), Expect = 1e-17 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| | || ||| |||| |||| |||||||| | | |||||||| ||||||||| Sbjct 768552 AAATAAAAAAAAAATTGAAAAAAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 768610 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 768611 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 768651 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1542442 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1542501 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1542502 TGAGCTAATAGGCC 1542515 >seq261 Length=546652 Score = 102 bits (112), Expect = 4e-17 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || |||| | ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 399134 AGAAAGAAGAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 399075 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||| |||| |||||||||| |||| Sbjct 399074 TAGCACGCCGCTCTAACCAGCTGAGCTAATAGGCC 399040 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || |||| | ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 247314 AGAAAGAAGAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 247373 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| | |||| |||||||||| |||| Sbjct 247374 TAGCACGACGCCCCAACCAGCTGAGCTAATAGGCC 247408 >seq17 Length=1563720 Score = 102 bits (112), Expect = 4e-17 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 311174 TAAAACAAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 311115 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||| || |||| |||||||||| ||||| Sbjct 311114 CGCGCTAACCAGCTGAGCTAATAGGCCG 311087 >seq361 Length=447752 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||||||| | | |||||||| ||||||||||||||||||| || || Sbjct 44922 AAAAAACAA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCTCGCCG 44864 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 44863 CTCTAACCAGCTGAGCTAATAGGCC 44839 >seq349 Length=455556 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| |||||||||||||||||||||| |||||| || Sbjct 189244 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGCCGCTCTAAC 189185 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 189184 CAGCTGAGCTAATAGGCC 189167 >seq3 Length=3914344 Score = 95.1 bits (104), Expect = 6e-15 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2629849 AAAAAGGAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 2629907 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||| |||||||||| ||||| Sbjct 2629908 CTCTAACCAGCTGAGCTAATAGGCCG 2629933 >seq1 Length=4167794 Score = 95.1 bits (104), Expect = 6e-15 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 3675652 AAAAAAGAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 3675594 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||| |||||||||| ||||| Sbjct 3675593 CTCTAACCAGCTGAGCTAATAGGCCG 3675568 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484246131832