Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq250 131 3e-26 seq30 114 2e-21 seq1132 113 7e-21 seq352 113 7e-21 seq495 107 3e-19 seq416 107 3e-19 seq61 105 1e-18 seq55 104 4e-18 seq35 102 1e-17 seq77 93.3 7e-15 seq1466 84.2 3e-12 >seq250 Length=553039 Score = 131 bits (144), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| ||||||||||| |||||||| ||| Sbjct 451061 GACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGTGGCGTC 451002 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| || |||| |||| || | ||||||||| | || Sbjct 451001 AAGCGTATCAGTGGCCTCATCTACGAGGAGACCCGTGGAGTGCTCAAGATCTTCTTGGAG 450942 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| ||| | ||| || |||||||| | | |||||||| || | Sbjct 450941 AATGTGATCCGTGACGCTGTGACCTACACTGAGCACGCCAGGAGGAAGACTGTGACGGCG 450882 Query 16640 ATGGATATCGTCTATGC 16656 ||||| ||||||| || Sbjct 450881 ATGGACGTCGTCTACGC 450865 >seq30 Length=1365002 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| ||||| || ||||| || || | ||||| || Sbjct 660305 GACAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTCTTGCCCGCAGAGGTGGTGTG 660364 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || | || || || | | | ||| |||||||||| || || Sbjct 660365 AAGCGAATCAGCGGTCTGATATACGAGGAAACCAGAGGAGTTCTGAAGATCTTTCTGGAG 660424 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| | ||||||| | || ||||||||||| | | |||||||| ||| || Sbjct 660425 AATGTTATTCGTGATGCTGTGACGTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCC 660484 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 |||||| | || ||||| ||||| Sbjct 660485 ATGGATGTGGTGTATGCTTTGAA 660507 >seq1132 Length=106585 Score = 113 bits (124), Expect = 7e-21 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| | || ||||| | || |||||| Sbjct 46671 GACAACATCCAGGGGATCACCAAGCCGGCCATCCGAAGGCTCGCTCGCAGAGGAGGAGTC 46612 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | || | |||||||||| | | | ||| | ||||||||| | || Sbjct 46611 AAGCGCATTAGCGGCCTCATCTATGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 46552 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||| ||| | || ||||||||||| | | |||||||| || || Sbjct 46551 AACGTGATTCGTGACGCTGTAACATACACCGAGCACGCCAGGAGGAAGACTGTGACTGCC 46492 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || || | | |||||||| ||| ||||| Sbjct 46491 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGTCGAACCCTCTATGGTTTCGGAGGTTAA 46432 >seq352 Length=454784 Score = 113 bits (124), Expect = 7e-21 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || || || ||||| |||||| | ||||| || Sbjct 350991 GACAACATCCAGGGTATCACCAAGCCTGCGATTCGGCGTCTCGCTCGTAGAGGTGGCGTG 351050 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || |||| | | || | |||||||| || || Sbjct 351051 AAGCGTATCAGCGGTCTGATCTACGAGGAGACCAGAGGAGTGCTCAAGATCTTTCTGGAG 351110 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || ||||||||||| | | |||||||| ||| || Sbjct 351111 AACGTGATTCGTGATGCCGTGACTTACACCGAGCACGCGAGGAGGAAGACTGTGACCGCC 351170 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| | || | ||||| | | | || ||||| || ||||| Sbjct 351171 ATGGATGTGGTGTATGCTCTCAAGAGGCAAGGAAGGACCCTCTACGGTTTCGGGGGTTAA 351230 >seq495 Length=340936 Score = 107 bits (118), Expect = 3e-19 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| ||||||||||| ||||| || ||| Sbjct 238945 GACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGCGTC 239004 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| || | || | ||||||||| | || Sbjct 239005 AAGCGTATCAGCGGCCTCATCTACGAGGAGACCCGCGGAGTGCTCAAGATCTTCTTGGAG 239064 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||| | || ||||||||||| | |||||||| || | Sbjct 239065 AATGTGATCCGGGATGCCGTGACTTACACCGAGCACGCCCGGAGGAAGACTGTGACGGCG 239124 Query 16640 ATGGATATCGTCTATGC 16656 ||||| | |||||||| Sbjct 239125 ATGGACGTTGTCTATGC 239141 >seq416 Length=401743 Score = 107 bits (118), Expect = 3e-19 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || ||||| || | | || || || || |||||||| |||||||| ||||| || || Sbjct 370183 GCAAAACGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGAATCACAAAGCCGGCCAT 370125 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| | || || || |||||| | || || |||| || |||| Sbjct 370124 CCGCCGTTTGGCTCGCAGGGGCGGCGTGAAGCGTATTAGCGGTCTGATCTACGAGGAGAC 370065 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||| | ||| ||| ||| || || | ||| ||||| Sbjct 370064 ACGTGGAGTGCTCAAGATCTTTTTGGAGAACGTCATCAGAGACGCCGTGACCTACACCGA 370005 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || |||||||| | ||||| || | ||||| || || Sbjct 370004 GCACGCTCGCCGGAAGACCGTGACGGCCATGGATGTGGTCTACGCGCTCAAACGGCAGGG 369945 Query 16672 C 16672 | Sbjct 369944 C 369944 >seq61 Length=1134436 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || || |||||||| || || || ||||| ||||| | ||||| || Sbjct 1036455 GACAACATCCAGGGCATTACCAAGCCTGCGATTCGCCGTCTTGCTCGCAGAGGTGGCGTG 1036396 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || |||| | | ||| | |||||||| | || Sbjct 1036395 AAGCGTATCAGCGGTCTGATCTACGAGGAGACCAGAGGGGTTCTCAAGATCTTTTTGGAG 1036336 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||| || | ||| ||||||||||||| | |||||||| ||| || Sbjct 1036335 AACGTGATTCGTGACGCCGTGACCTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCC 1036276 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 ||||| | || ||||| |||| Sbjct 1036275 ATGGACGTGGTGTATGCTCTGAA 1036253 Score = 89.7 bits (98), Expect = 8e-14 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || |||||||| || ||||||||||| || || Sbjct 620027 GCGAAGCGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 620085 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| || | || || || ||||| || || || |||| || |||| Sbjct 620086 TCGCCGCCTGGCCCGCAGAGGCGGCGTGAAGCGGATCAGCGGCCTGATCTACGAGGAGAC 620145 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | |||||||| ||| ||| ||| || | ||||| | ||| || || Sbjct 620146 CCGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGGGATGCCGTTACCTACACGGA 620205 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| | | ||||| || || | ||||| Sbjct 620206 GCACGCCAGGAGGAAGACGGTGACGGCGATGGA 620238 >seq55 Length=1184625 Score = 104 bits (114), Expect = 4e-18 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || ||||| || | | || || || || |||||||| |||||||| ||||| || || Sbjct 202418 GCAAAACGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGAATCACAAAGCCGGCCAT 202476 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| | || || || |||||| | || || |||| || |||| Sbjct 202477 CCGCCGTTTGGCTCGCAGGGGCGGCGTGAAGCGTATTAGCGGTCTGATCTACGAGGAGAC 202536 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||| | ||| ||| ||| || || | ||| ||||| Sbjct 202537 ACGTGGAGTGCTCAAGATCTTTTTGGAGAACGTCATCAGAGACGCCGTGACCTACACCGA 202596 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || |||||||| | ||||| || | ||| | || || Sbjct 202597 GCACGCTCGCCGGAAGACCGTGACGGCCATGGATGTGGTCTACGCGCTCAAAAGGCAGGG 202656 Query 16672 C 16672 | Sbjct 202657 C 202657 >seq35 Length=1326757 Score = 102 bits (112), Expect = 1e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || ||||| || | |||| || || || |||||||| || |||||||||||||| || Sbjct 337188 GCAAAACGTCACCGGAAGATC-CTCCGTGACAACATCCAGGGCATCACCAAGCCAGCGAT 337246 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| || | ||||| || ||||| || || || | || || || | Sbjct 337247 TCGCCGCCTGGCCCGCAGAGGTGGCGTGAAGCGAATCAGCGGCCTGATATACGAGGAAAC 337306 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | |||||||| ||| ||| ||| || | |||||| | ||| || || Sbjct 337307 TCGCGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCCGTTACCTACACGGA 337366 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| || | | ||||| || || ||||||| | |||||||| Sbjct 337367 GCATGCAAGGAGGAAGACGGTGACGGCCATGGACGTTGTCTATGC 337411 >seq77 Length=1029067 Score = 93.3 bits (102), Expect = 7e-15 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || || || | || ||||| | || || || Sbjct 384822 GACAACATCCAGGGGATCACCAAGCCGGCCATACGAAGGCTCGCTCGCAGAGGAGGTGTG 384881 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | || | | |||||||| | | | ||| | ||||||||| | || Sbjct 384882 AAGCGCATAAGCGGCCTCATATATGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 384941 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| | || |||||||| || | | ||||| || ||| || Sbjct 384942 AACGTCATTCGCGACGCTGTGACGTACACCGAGCATGCCAGGAGGAAGACGGTGACCGCC 385001 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || || | |||||||||| ||| ||||| Sbjct 385002 ATGGATGTTGTCTATGCTCTAAAGAGGCAGGGACGAACCCTTTATGGTTTCGGAGGTTAA 385061 Query 16700 T 16700 | Sbjct 385062 T 385062 >seq1466 Length=45342 Score = 84.2 bits (92), Expect = 3e-12 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || |||||||| || ||||||||||| || || Sbjct 39798 GCGAAGCGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 39740 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| || | || || || ||||| || || || |||| || |||| Sbjct 39739 TCGGCGCCTGGCCCGCAGAGGCGGCGTGAAGCGAATCAGCGGCCTGATCTACGAGGAGAC 39680 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||| ||| ||| ||| || | || || | ||| || || Sbjct 39679 CCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGGGACGCCGTTACCTACACGGA 39620 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| | | ||||| || || | ||||| Sbjct 39619 GCACGCCAGGAGGAAGACGGTGACGGCGATGGA 39587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073204982126