Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq250 131 3e-26
seq30 114 2e-21
seq1132 113 7e-21
seq352 113 7e-21
seq495 107 3e-19
seq416 107 3e-19
seq61 105 1e-18
seq55 104 4e-18
seq35 102 1e-17
seq77 93.3 7e-15
seq1466 84.2 3e-12
>seq250
Length=553039
Score = 131 bits (144), Expect = 3e-26
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || ||||| ||||||||||| |||||||| |||
Sbjct 451061 GACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGTGGCGTC 451002
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| || |||| |||| || | ||||||||| | ||
Sbjct 451001 AAGCGTATCAGTGGCCTCATCTACGAGGAGACCCGTGGAGTGCTCAAGATCTTCTTGGAG 450942
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| ||| | ||| || |||||||| | | |||||||| || |
Sbjct 450941 AATGTGATCCGTGACGCTGTGACCTACACTGAGCACGCCAGGAGGAAGACTGTGACGGCG 450882
Query 16640 ATGGATATCGTCTATGC 16656
||||| ||||||| ||
Sbjct 450881 ATGGACGTCGTCTACGC 450865
>seq30
Length=1365002
Score = 114 bits (126), Expect = 2e-21
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| ||||| || ||||| || || | ||||| ||
Sbjct 660305 GACAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTCTTGCCCGCAGAGGTGGTGTG 660364
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || || || | || || || | | | ||| |||||||||| || ||
Sbjct 660365 AAGCGAATCAGCGGTCTGATATACGAGGAAACCAGAGGAGTTCTGAAGATCTTTCTGGAG 660424
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||||| | ||||||| | || ||||||||||| | | |||||||| ||| ||
Sbjct 660425 AATGTTATTCGTGATGCTGTGACGTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCC 660484
Query 16640 ATGGATATCGTCTATGCATTGAA 16662
|||||| | || ||||| |||||
Sbjct 660485 ATGGATGTGGTGTATGCTTTGAA 660507
>seq1132
Length=106585
Score = 113 bits (124), Expect = 7e-21
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || ||||| | || ||||| | || ||||||
Sbjct 46671 GACAACATCCAGGGGATCACCAAGCCGGCCATCCGAAGGCTCGCTCGCAGAGGAGGAGTC 46612
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| | || | |||||||||| | | | ||| | ||||||||| | ||
Sbjct 46611 AAGCGCATTAGCGGCCTCATCTATGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 46552
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | ||| ||| | || ||||||||||| | | |||||||| || ||
Sbjct 46551 AACGTGATTCGTGACGCTGTAACATACACCGAGCACGCCAGGAGGAAGACTGTGACTGCC 46492
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | |||||||| | || | || || || | | |||||||| ||| |||||
Sbjct 46491 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGTCGAACCCTCTATGGTTTCGGAGGTTAA 46432
>seq352
Length=454784
Score = 113 bits (124), Expect = 7e-21
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || || || ||||| |||||| | ||||| ||
Sbjct 350991 GACAACATCCAGGGTATCACCAAGCCTGCGATTCGGCGTCTCGCTCGTAGAGGTGGCGTG 351050
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || || |||| || |||| | | || | |||||||| || ||
Sbjct 351051 AAGCGTATCAGCGGTCTGATCTACGAGGAGACCAGAGGAGTGCTCAAGATCTTTCTGGAG 351110
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | |||||| | || ||||||||||| | | |||||||| ||| ||
Sbjct 351111 AACGTGATTCGTGATGCCGTGACTTACACCGAGCACGCGAGGAGGAAGACTGTGACCGCC 351170
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || ||||| | || | ||||| | | | || ||||| || |||||
Sbjct 351171 ATGGATGTGGTGTATGCTCTCAAGAGGCAAGGAAGGACCCTCTACGGTTTCGGGGGTTAA 351230
>seq495
Length=340936
Score = 107 bits (118), Expect = 3e-19
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || ||||| ||||||||||| ||||| || |||
Sbjct 238945 GACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGCGTC 239004
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || | |||| || |||| || | || | ||||||||| | ||
Sbjct 239005 AAGCGTATCAGCGGCCTCATCTACGAGGAGACCCGCGGAGTGCTCAAGATCTTCTTGGAG 239064
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||||| | || ||||||||||| | |||||||| || |
Sbjct 239065 AATGTGATCCGGGATGCCGTGACTTACACCGAGCACGCCCGGAGGAAGACTGTGACGGCG 239124
Query 16640 ATGGATATCGTCTATGC 16656
||||| | ||||||||
Sbjct 239125 ATGGACGTTGTCTATGC 239141
>seq416
Length=401743
Score = 107 bits (118), Expect = 3e-19
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| || ||||| || | | || || || || |||||||| |||||||| ||||| || ||
Sbjct 370183 GCAAAACGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGAATCACAAAGCCGGCCAT 370125
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| ||||||| | || || || |||||| | || || |||| || ||||
Sbjct 370124 CCGCCGTTTGGCTCGCAGGGGCGGCGTGAAGCGTATTAGCGGTCTGATCTACGAGGAGAC 370065
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || | |||||||| | ||| ||| ||| || || | ||| |||||
Sbjct 370064 ACGTGGAGTGCTCAAGATCTTTTTGGAGAACGTCATCAGAGACGCCGTGACCTACACCGA 370005
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || ||||| || || |||||||| | ||||| || | ||||| || ||
Sbjct 370004 GCACGCTCGCCGGAAGACCGTGACGGCCATGGATGTGGTCTACGCGCTCAAACGGCAGGG 369945
Query 16672 C 16672
|
Sbjct 369944 C 369944
>seq61
Length=1134436
Score = 105 bits (116), Expect = 1e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || || |||||||| || || || ||||| ||||| | ||||| ||
Sbjct 1036455 GACAACATCCAGGGCATTACCAAGCCTGCGATTCGCCGTCTTGCTCGCAGAGGTGGCGTG 1036396
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || || |||| || |||| | | ||| | |||||||| | ||
Sbjct 1036395 AAGCGTATCAGCGGTCTGATCTACGAGGAGACCAGAGGGGTTCTCAAGATCTTTTTGGAG 1036336
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | ||| || | ||| ||||||||||||| | |||||||| ||| ||
Sbjct 1036335 AACGTGATTCGTGACGCCGTGACCTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCC 1036276
Query 16640 ATGGATATCGTCTATGCATTGAA 16662
||||| | || ||||| ||||
Sbjct 1036275 ATGGACGTGGTGTATGCTCTGAA 1036253
Score = 89.7 bits (98), Expect = 8e-14
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | | || || || || |||||||| || ||||||||||| || ||
Sbjct 620027 GCGAAGCGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 620085
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || ||||| || | || || || ||||| || || || |||| || ||||
Sbjct 620086 TCGCCGCCTGGCCCGCAGAGGCGGCGTGAAGCGGATCAGCGGCCTGATCTACGAGGAGAC 620145
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | |||||||| ||| ||| ||| || | ||||| | ||| || ||
Sbjct 620146 CCGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGGGATGCCGTTACCTACACGGA 620205
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
|||||| | | ||||| || || | |||||
Sbjct 620206 GCACGCCAGGAGGAAGACGGTGACGGCGATGGA 620238
>seq55
Length=1184625
Score = 104 bits (114), Expect = 4e-18
Identities = 169/241 (70%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| || ||||| || | | || || || || |||||||| |||||||| ||||| || ||
Sbjct 202418 GCAAAACGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGAATCACAAAGCCGGCCAT 202476
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| ||||||| | || || || |||||| | || || |||| || ||||
Sbjct 202477 CCGCCGTTTGGCTCGCAGGGGCGGCGTGAAGCGTATTAGCGGTCTGATCTACGAGGAGAC 202536
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || | |||||||| | ||| ||| ||| || || | ||| |||||
Sbjct 202537 ACGTGGAGTGCTCAAGATCTTTTTGGAGAACGTCATCAGAGACGCCGTGACCTACACCGA 202596
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || ||||| || || |||||||| | ||||| || | ||| | || ||
Sbjct 202597 GCACGCTCGCCGGAAGACCGTGACGGCCATGGATGTGGTCTACGCGCTCAAAAGGCAGGG 202656
Query 16672 C 16672
|
Sbjct 202657 C 202657
>seq35
Length=1326757
Score = 102 bits (112), Expect = 1e-17
Identities = 159/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| || ||||| || | |||| || || || |||||||| || |||||||||||||| ||
Sbjct 337188 GCAAAACGTCACCGGAAGATC-CTCCGTGACAACATCCAGGGCATCACCAAGCCAGCGAT 337246
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || ||||| || | ||||| || ||||| || || || | || || || |
Sbjct 337247 TCGCCGCCTGGCCCGCAGAGGTGGCGTGAAGCGAATCAGCGGCCTGATATACGAGGAAAC 337306
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || | |||||||| ||| ||| ||| || | |||||| | ||| || ||
Sbjct 337307 TCGCGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCCGTTACCTACACGGA 337366
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
||| || | | ||||| || || ||||||| | ||||||||
Sbjct 337367 GCATGCAAGGAGGAAGACGGTGACGGCCATGGACGTTGTCTATGC 337411
>seq77
Length=1029067
Score = 93.3 bits (102), Expect = 7e-15
Identities = 165/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || || || | || ||||| | || || ||
Sbjct 384822 GACAACATCCAGGGGATCACCAAGCCGGCCATACGAAGGCTCGCTCGCAGAGGAGGTGTG 384881
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| | || | | |||||||| | | | ||| | ||||||||| | ||
Sbjct 384882 AAGCGCATAAGCGGCCTCATATATGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 384941
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | || ||| | || |||||||| || | | ||||| || ||| ||
Sbjct 384942 AACGTCATTCGCGACGCTGTGACGTACACCGAGCATGCCAGGAGGAAGACGGTGACCGCC 385001
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | |||||||| | || | || || || | |||||||||| ||| |||||
Sbjct 385002 ATGGATGTTGTCTATGCTCTAAAGAGGCAGGGACGAACCCTTTATGGTTTCGGAGGTTAA 385061
Query 16700 T 16700
|
Sbjct 385062 T 385062
>seq1466
Length=45342
Score = 84.2 bits (92), Expect = 3e-12
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | | || || || || |||||||| || ||||||||||| || ||
Sbjct 39798 GCGAAGCGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 39740
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || ||||| || | || || || ||||| || || || |||| || ||||
Sbjct 39739 TCGGCGCCTGGCCCGCAGAGGCGGCGTGAAGCGAATCAGCGGCCTGATCTACGAGGAGAC 39680
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || | |||||||| ||| ||| ||| || | || || | ||| || ||
Sbjct 39679 CCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGGGACGCCGTTACCTACACGGA 39620
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
|||||| | | ||||| || || | |||||
Sbjct 39619 GCACGCCAGGAGGAAGACGGTGACGGCGATGGA 39587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073204982126
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