Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq157 129 7e-25 seq310 86.0 8e-12 seq581 82.4 1e-10 >seq157 Length=750868 Score = 129 bits (142), Expect = 7e-25 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 138311 TCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTT 138370 ||| || ||||||||||||| ||| |||||||| ||||| || || ||||| | || Sbjct 399152 TCAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTT 399211 Query 138371 GTTCCTTC--AGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCA 138428 || ||| |||||||| |||| || || | ||| | |||||||||||||| || | Sbjct 399212 TTTTTTTCCAAGGGTTTC-ATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTT 399270 Query 138429 GGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTG 138488 | | || | ||||||| | || ||||||||||||||||| |||||| ||||||| Sbjct 399271 GAAGTGTAGGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTTA 399330 Query 138489 TATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAG 138540 | ||||||| | || ||||||| || | || ||| | || ||||||| Sbjct 399331 TTTGAAGATAGTGATGGTGCAAATACATTCCATGC-TTTAACCCAACTCAAG 399381 >seq310 Length=495333 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 136098 TGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTT 136157 ||||| |||||||| | |||||||| |||||||| ||||||||||| | ||||||| Sbjct 284104 TGATCATCCAATATTCTAGTTTCAACAATTCTCGTTCTTTACACTTTTTCTTAGCTGCTT 284045 Query 136158 GGCCTGTTGTCGGTATCTGGTT 136179 ||||||| || ||||||| ||| Sbjct 284044 GGCCTGTAGTAGGTATCTAGTT 284023 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 136098 TGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTT 136157 ||||| |||||||| | |||||||| |||||||| ||||||||||| | ||||||| Sbjct 417320 TGATCATCCAATATTCTAGTTTCAACAATTCTCGTTCTTTACACTTTTTCTTAGCTGCTT 417379 Query 136158 GGCCTGTTGTCGGTATCTGGTT 136179 ||||||| || ||||||| ||| Sbjct 417380 GGCCTGTAGTAGGTATCTAGTT 417401 >seq581 Length=281460 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/69 (87%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 119469 GTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCTAC-- 119526 || |||||||||||||||| |||||||||||||||| ||||| |||||||||||| | Sbjct 124795 GTGGCCAAGTGGTAAGGCAACGGGTTTTGGTCCCGCTATTCGGAGGTTCGAATCCTTCCG 124736 Query 119527 TCTCAGAAC 119535 || |||||| Sbjct 124735 TCCCAGAAC 124727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627950872172800