Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq222 114 4e-21 seq435 98.7 3e-16 >seq222 Length=596275 Score = 114 bits (126), Expect = 4e-21 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 19916 GGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975 |||||| || || ||| ||| || | || || || || |||||||| ||| | || Sbjct 106768 GGAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAAC 106827 Query 19976 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTT 20035 || ||||| || |||| || || || ||||| ||||||| |||||||||||| ||| Sbjct 106828 CTACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTT 106887 Query 20036 CAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 |||||||| |||||||||||| ||||| || ||| ||| Sbjct 106888 CAATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTT 106925 Score = 114 bits (126), Expect = 4e-21 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 19916 GGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975 |||||| || || ||| ||| || | || || || || |||||||| ||| | || Sbjct 179843 GGAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAAC 179784 Query 19976 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTT 20035 || ||||| || |||| || || || ||||| ||||||| |||||||||||| ||| Sbjct 179783 CTACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTT 179724 Query 20036 CAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 |||||||| |||||||||||| ||||| || ||| ||| Sbjct 179723 CAATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTT 179686 >seq435 Length=389137 Score = 98.7 bits (108), Expect = 3e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || || ||||||||||| ||||| | || |||| || |||| || || || ||| Sbjct 3078 GGTTACAAATTCGGGCAAGAGGAAGAAATCTACTATATCGTAGCTGTTCATGGTTATTTT 3137 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||| || |||||||||||| ||||||||||| |||||||||| | ||||| || Sbjct 3138 GGCTTATTAATTTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTAGACTTCTTCCTA 3197 Query 20067 GCTACTT 20073 ||| ||| Sbjct 3198 GCTTCTT 3204 Score = 98.7 bits (108), Expect = 3e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || || ||||||||||| ||||| | || |||| || |||| || || || ||| Sbjct 109261 GGTTACAAATTCGGGCAAGAGGAAGAAATCTACTATATCGTAGCTGTTCATGGTTATTTT 109202 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||| || |||||||||||| ||||||||||| |||||||||| | ||||| || Sbjct 109201 GGCTTATTAATTTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTAGACTTCTTCCTA 109142 Query 20067 GCTACTT 20073 ||| ||| Sbjct 109141 GCTTCTT 109135 Score = 98.7 bits (108), Expect = 3e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || || ||||||||||| ||||| | || |||| || |||| || || || ||| Sbjct 171443 GGTTACAAATTCGGGCAAGAGGAAGAAATCTACTATATCGTAGCTGTTCATGGTTATTTT 171502 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||| || |||||||||||| ||||||||||| |||||||||| | ||||| || Sbjct 171503 GGCTTATTAATTTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTAGACTTCTTCCTA 171562 Query 20067 GCTACTT 20073 ||| ||| Sbjct 171563 GCTTCTT 171569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437857337592