Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq202 141 1e-28
seq1330 134 2e-26
seq801 134 2e-26
seq8 107 2e-18
>seq202
Length=624202
Score = 141 bits (156), Expect = 1e-28
Identities = 298/438 (68%), Gaps = 10/438 (2%)
Strand=Plus/Plus
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 31367 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 31426
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 31427 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 31486
Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33471
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 31487 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAG 31545
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| ||| ||||| | | ||||| | ||||||||| || ||||| || || ||
Sbjct 31546 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCG 31602
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 31603 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 31662
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651
|| ||||| || || || ||||| |||||||| ||||| || |||||||| | |||
Sbjct 31663 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCC 31722
Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTC 33710
|||| | ||| || || | || || | | || || | ||||||| || || |||||
Sbjct 31723 TCGGCGACCTGGACCTC-CTTCATAAACCTCCCAGCGAGATTTTCAAGGACAATGCCGTC 31781
Query 33711 ACTGGCTGCAAAAAACGC 33728
||| || || || ||
Sbjct 31782 GGAGGCAGCGAAGAAGGC 31799
>seq1330
Length=73179
Score = 134 bits (148), Expect = 2e-26
Identities = 242/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Minus
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 26770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 26711
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 26710 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 26651
Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33471
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 26650 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 26592
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 26591 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 26535
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 26534 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 26475
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 26474 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 26425
Score = 134 bits (148), Expect = 2e-26
Identities = 242/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Plus
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 46410 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 46469
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 46470 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 46529
Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33471
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 46530 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 46588
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 46589 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 46645
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 46646 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 46705
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 46706 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 46755
>seq801
Length=188201
Score = 134 bits (148), Expect = 2e-26
Identities = 242/350 (69%), Gaps = 8/350 (2%)
Strand=Plus/Minus
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
||| |||||| ||||| |||||||||| |||||||||| || || |||||||| |
Sbjct 11771 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGA 11712
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| || ||||| ||||||| || |||||||||||||||||||| | ||| || |
Sbjct 11711 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 11652
Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33471
| ||||| || || || || ||| |||||||| | | || ||| | | | ||| |
Sbjct 11651 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 11593
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| ||| ||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 11592 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 11536
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
|| || | ||||| || || || | || || | || || |||| | ||
Sbjct 11535 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 11476
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641
|| ||||| || || || ||||| |||||||| ||||| || ||||||||
Sbjct 11475 CTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 11426
>seq8
Length=1797525
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| ||||| | || | || || | |||| |||||||||||||||||| ||| ||
Sbjct 10363 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCC 10304
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| || | ||||| || || ||||| || || ||||||| || ||| || |||
Sbjct 10303 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 10244
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| ||||| || || ||| ||| | || ||| ||| || || ||||| ||
Sbjct 10243 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 10184
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
|| || ||||||||||| ||||| || || || |||||
Sbjct 10183 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622930209115120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |