Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 5e-13
seq580 84.2 2e-11
seq54 84.2 2e-11
>seq1
Length=4167794
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | |||||||| | |||||| |||| | || || |
Sbjct 1163059 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACCCTCGAGGTCGAGTCTTCC 1163000
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | |||||| ||||| ||||| |||||||| || || || ||
Sbjct 1162999 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1162940
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | || ||| || || |||||||| | ||| | || || || |||
Sbjct 1162939 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGATTACAAC 1162880
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || || || || |||| |||| ||
Sbjct 1162879 ATCCAGAAGGAGTCAACCCTCCACTTGGTGCT 1162848
>seq580
Length=281551
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | || || || | |||||| |||| | || |||
Sbjct 199395 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 199454
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 199455 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 199514
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | || || || || |||||||||| ||| | | ||||| |||
Sbjct 199515 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 199574
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| ||||| || || || |||| |||| || | ||| | || ||||
Sbjct 199575 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTTCGCGGTGGAA 199623
>seq54
Length=1192742
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | || || || | |||||| |||| | || |||
Sbjct 263046 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 263105
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 263106 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 263165
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | || || || || |||||||||| ||| | | ||||| |||
Sbjct 263166 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 263225
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| ||||| || || || |||| |||| || | ||| | || ||||
Sbjct 263226 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTTCGCGGTGGAA 263274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478649344483040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |