Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 seq580 84.2 2e-11 seq54 84.2 2e-11 >seq1 Length=4167794 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | |||||||| | |||||| |||| | || || | Sbjct 1163059 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACCCTCGAGGTCGAGTCTTCC 1163000 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||| |||||||| || || || || Sbjct 1162999 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1162940 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||| || || |||||||| | ||| | || || || ||| Sbjct 1162939 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGATTACAAC 1162880 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| |||| || Sbjct 1162879 ATCCAGAAGGAGTCAACCCTCCACTTGGTGCT 1162848 >seq580 Length=281551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | |||||| |||| | || ||| Sbjct 199395 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 199454 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 199455 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 199514 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || || || || |||||||||| ||| | | ||||| ||| Sbjct 199515 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 199574 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| || || || |||| |||| || | ||| | || |||| Sbjct 199575 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTTCGCGGTGGAA 199623 >seq54 Length=1192742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | |||||| |||| | || ||| Sbjct 263046 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 263105 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 263106 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 263165 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || || || || |||||||||| ||| | | ||||| ||| Sbjct 263166 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 263225 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| || || || |||| |||| || | ||| | || |||| Sbjct 263226 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTTCGCGGTGGAA 263274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649344483040