Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq615 96.9 3e-15 seq15 89.7 4e-13 seq580 82.4 7e-11 seq139 82.4 7e-11 seq54 82.4 7e-11 >seq1 Length=4167794 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | |||||||| | || ||| |||| |||||| | | Sbjct 1163059 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACCCTCGAGGTCGAGTCTTCC 1163000 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 1162999 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1162940 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| |||||||| | | ||| | || ||||| ||| Sbjct 1162939 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGATTACAAC 1162880 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | || || ||| Sbjct 1162879 ATCCAGAAGGAGTCAACCCTCCACTTGGTG 1162850 >seq615 Length=266788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || ||||||||||| ||||| |||||||||||| |||||| | || |||||| | ||| Sbjct 187880 GATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 187821 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | ||||||||||| ||||| || || ||| |||| | || || Sbjct 187820 GATGGCCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 187761 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||| ||||| ||||| || Sbjct 187760 AGGCTGAGGGGAGGAACTATGAT 187738 >seq15 Length=1624393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || || |||| |||||| | | Sbjct 1058296 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 1058237 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || ||||| ||||||||||| Sbjct 1058236 GACACGATCGATAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1058177 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| |||| | | | | | |||||| || Sbjct 1058176 CAGCGGCTTATCTTCGCCGGGAAGCAGCTCGAGGATGGCCGGACCCTTGCCGATTACAAT 1058117 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| || ||||| Sbjct 1058116 ATCCAGAAGGAATCGACTCTTCAT 1058093 >seq580 Length=281551 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || ||| |||| || ||| | Sbjct 199395 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 199454 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 199455 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 199514 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || ||||| |||||||||| | ||| | | || || ||| Sbjct 199515 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 199574 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | || || ||| Sbjct 199575 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 199604 >seq139 Length=803459 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 752085 AAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGC 752026 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 752025 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 751966 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||| | || || | || ||||||||| |||||||| Sbjct 751965 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGA 751928 >seq54 Length=1192742 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || ||| |||| || ||| | Sbjct 263046 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 263105 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 263106 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 263165 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || ||||| |||||||||| | ||| | | || || ||| Sbjct 263166 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 263225 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | || || ||| Sbjct 263226 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 263255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924566658210