Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
seq615 96.9 3e-15
seq15 89.7 4e-13
seq580 82.4 7e-11
seq139 82.4 7e-11
seq54 82.4 7e-11
>seq1
Length=4167794
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || ||||| | |||||||| | || ||| |||| |||||| | |
Sbjct 1163059 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACCCTCGAGGTCGAGTCTTCC 1163000
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| ||||| ||||| ||||| || || || || ||
Sbjct 1162999 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1162940
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||| ||||| |||||||| | | ||| | || ||||| |||
Sbjct 1162939 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGATTACAAC 1162880
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || || || || | || || |||
Sbjct 1162879 ATCCAGAAGGAGTCAACCCTCCACTTGGTG 1162850
>seq615
Length=266788
Score = 96.9 bits (106), Expect = 3e-15
Identities = 108/143 (76%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| ||||||||||| ||||| |||||||||||| |||||| | || |||||| | |||
Sbjct 187880 GATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 187821
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| | ||| | ||||||||||| ||||| || || ||| |||| | || ||
Sbjct 187820 GATGGCCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 187761
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| |||| ||||| ||||| ||
Sbjct 187760 AGGCTGAGGGGAGGAACTATGAT 187738
>seq15
Length=1624393
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || || | || || |||| |||||| | |
Sbjct 1058296 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 1058237
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | || || ||||| ||||| || ||||| |||||||||||
Sbjct 1058236 GACACGATCGATAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1058177
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||| ||||| ||||| |||| | | | | | |||||| ||
Sbjct 1058176 CAGCGGCTTATCTTCGCCGGGAAGCAGCTCGAGGATGGCCGGACCCTTGCCGATTACAAT 1058117
Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194
|| || || ||||| || |||||
Sbjct 1058116 ATCCAGAAGGAATCGACTCTTCAT 1058093
>seq580
Length=281551
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || ||||| | || || || | || ||| |||| || ||| |
Sbjct 199395 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 199454
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| ||||| || || || || ||
Sbjct 199455 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 199514
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | ||||| | || || ||||| |||||||||| | ||| | | || || |||
Sbjct 199515 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 199574
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| ||||| || || || | || || |||
Sbjct 199575 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 199604
>seq139
Length=803459
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || || |||| |||||| |
Sbjct 752085 AAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGC 752026
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| |||||||||||| | ||||| ||||| ||||| || ||||| || || ||
Sbjct 752025 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 751966
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
|| ||| | || || | || ||||||||| ||||||||
Sbjct 751965 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGA 751928
>seq54
Length=1192742
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || ||||| | || || || | || ||| |||| || ||| |
Sbjct 263046 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 263105
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| ||||| || || || || ||
Sbjct 263106 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 263165
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | ||||| | || || ||||| |||||||||| | ||| | | || || |||
Sbjct 263166 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 263225
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| ||||| || || || | || || |||
Sbjct 263226 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 263255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429924566658210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |