Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq580 118 9e-22 seq54 118 9e-22 seq15 118 9e-22 seq687 95.1 1e-14 seq59 95.1 1e-14 seq819 86.0 5e-12 >seq580 Length=281551 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | ||||| || ||||||| |||| |||||||| || Sbjct 199622 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 199681 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 199682 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 199741 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | ||||||| || || | | |||||||| Sbjct 199742 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCGGATTACAA 199801 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || ||||| Sbjct 199802 CATCCAGAAAGAGTCAACCCTCCACTTGGTGCT 199834 >seq54 Length=1192742 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | ||||| || ||||||| |||| |||||||| || Sbjct 263273 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 263332 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 263333 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 263392 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | ||||||| || || | | |||||||| Sbjct 263393 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCGGATTACAA 263452 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || ||||| Sbjct 263453 CATCCAGAAAGAGTCAACCCTCCACTTGGTGCT 263485 >seq15 Length=1624393 Score = 118 bits (130), Expect = 9e-22 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| |||| || || | ||||| |||| || ||| ||| Sbjct 1057383 ATGCAGATATTTGTGAAGACACTGACAGGGAAGACGATCACTCTCGAGGTTGAGAGCTCT 1057324 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| || | ||| ||||| || ||||| ||||||||| Sbjct 1057323 GACACTATTGA--CAATGTCAAAGCTAAGATTCAG-GACAAGGAGGGGATCCCACCTGAC 1057267 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || || || ||||| |||| |||| ||| || | | |||||| Sbjct 1057266 CAGCAGAGGTTGATCTTCGCTGGGAAACAGCTAGAGGATGGTCGTACCCTTGCGGATTAC 1057207 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || ||| | || || Sbjct 1057206 AACATTCAGAAAGAGTCTACCCTCCATCTCGTTCT 1057172 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || || || ||||||| || ||||||| |||| || ||| Sbjct 1075975 AACCATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTCGAGAG 1075916 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || ||||| | ||| || ||| ||||| || || ||||| || || Sbjct 1075915 TTCGGATACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGA 1075856 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | ||||| ||||| || || | || || | || || | | ||||| Sbjct 1075855 CCAGCAGCGGTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTCGCGGATTA 1075796 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || ||||| ||||| ||| | ||||| || | || ||||| Sbjct 1075795 CAATATCCAGAAGGAATCGACGCTCCATCTGGTGCTTCGGTTGAGGGGAGG 1075745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| | || |||||| || Sbjct 1057611 ATGCAGATTTTTGTGAAGACCCTGACTGGAAAGACTATCACTCTGGAGGTGGAGAGTTCA 1057552 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | || ||||| | || | ||| ||||| || || ||||| || || | Sbjct 1057551 GATACCATAGA-TAACGTGAAGGCGAAGATTCAA-GACAAGGAGGGCATTCCTCCAGATC 1057494 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || ||||||||||||| || || || || |||| | || ||| ||||||| Sbjct 1057493 AGCAGAGGCTTATTTTTGCCGGGAAGCAGTTGGAGGATGGCAGGACCCTGGCGGATTACA 1057434 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 | || || || || || || || || | ||||| ||||| Sbjct 1057433 ACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTCAGGCT 1057394 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| |||| || ||| || Sbjct 1058296 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 1058237 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || ||||| || ||| ||||| || || || || || || || Sbjct 1058236 GACACGATCGA-TAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 1058178 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||| || ||||| || || | || |||| || || | | ||||||||| Sbjct 1058177 GCAGCGGCTTATCTTCGCCGGGAAGCAGCTCGAGGATGGCCGGACCCTTGCCGATTACAA 1058118 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| || || ||| | || || Sbjct 1058117 TATCCAGAAGGAATCGACTCTTCATCTGGTCCT 1058085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || ||||| | || || ||| | || || | || || ||| || Sbjct 1074832 AATGCAGATATTCGTGAAGACCCTAACTGGGAAAACAATTACCCTGGAGGTTGAGAGCTC 1074773 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || || || |||| || ||| || || |||||||| ||||| || Sbjct 1074772 TGACACTATTGA--CAATGTCAAAGC-TAAGATCCAGGATAAGGAAGGGATCCCACCGGA 1074716 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||| || ||||| | || |||| |||||| | | ||||| Sbjct 1074715 CCAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAGGATGGTCGCACACTTGCAGATTA 1074656 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || ||| | || || Sbjct 1074655 TAACATCCAGAAGGAGTCTACCCTCCATCTCGTCCT 1074620 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || | || || | || || ||| || Sbjct 1075743 ATGCAGATTTTCGTTAAAACCCTAACCGGGAAGACGATAACCTTGGAGGTCGAGAGTTCA 1075684 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| || || || || ||||| || || || Sbjct 1075683 GATACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCGGATCAG 1075624 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| || |||||||| ||||| ||||||| || || ||| ||||||||| Sbjct 1075623 CAGAGGCTTATCTTCGCCGGCAAGCAATTGGAAGATGGCCGAACCTTGGCGGATTACAAT 1075564 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || || ||| | || || | || ||||||| Sbjct 1075563 ATCCAGAAGGAATCGACTCTTCATCTTGTCCTCCGTCTCCGAGGAGG 1075517 >seq687 Length=229775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | ||||| ||| ||||||| | || || ||| ||| Sbjct 53116 ATGCAAATATTTGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAGGTTGAGAGCTCT 53175 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| |||||||| || || ||||| ||||| Sbjct 53176 GACACGATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 53235 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | || || | ||||| | | || ||||| Sbjct 53236 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAAC 53295 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 53296 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCT 53327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 24994 GAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||||| ||||| || ||||| || || | || || || ||||||| |||| || || Sbjct 52882 GAACAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAA 52941 Query 25053 TCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 ||||||||||| || |||| |||| || ||| ||||| || || ||||| Sbjct 52942 AGCTCTGACACTATTGATAATGTCA---AAGC-CAAGATCCAAGACAAGGAGGGCATTCC 52997 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 || ||||| || || | || ||||| ||||| || | || |||| ||||| | | Sbjct 52998 CCCAGACCAGCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGC 53057 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || ||||| || || | ||||| Sbjct 53058 CGACTACAACATACAGAAGGAGTCCACCCTCCACCTGGTGCT 53099 >seq59 Length=1152742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | ||||| ||| ||||||| | || || ||| ||| Sbjct 730597 ATGCAAATATTTGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAGGTTGAGAGCTCT 730656 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| |||||||| || || ||||| ||||| Sbjct 730657 GACACGATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 730716 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | || || | ||||| | | || ||||| Sbjct 730717 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAAC 730776 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 730777 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCT 730808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || ||||||| || ||||||| |||| || || Sbjct 893370 AACAGATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAA 893311 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| || || || || |||| || | || ||||| ||||| ||||| | Sbjct 893310 GCTCCGACACCATTGA--CAATGTCAAAGCCAAGATCCAA-GACAAGGAAGGTATTCCCC 893254 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||| || || | || ||||||||||| || | || || | ||||| | | || Sbjct 893253 CAGACCAGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCG 893194 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || || || ||||| || || Sbjct 893193 ACTACAACATCCAGAAGGAGTCCACCCTCCA 893163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 24994 GAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||||| ||||| || ||||| || || | || || || ||||||| |||| || || Sbjct 730363 GAACAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAA 730422 Query 25053 TCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 ||||||||||| || |||| |||| || ||| ||||| || || ||||| Sbjct 730423 AGCTCTGACACTATTGATAATGTCA---AAGC-CAAGATCCAAGACAAGGAGGGCATTCC 730478 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 || ||||| || || | || ||||| ||||| || | || |||| ||||| | | Sbjct 730479 CCCAGACCAGCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGC 730538 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || ||||| || || | ||||| Sbjct 730539 CGACTACAACATACAGAAGGAGTCCACCCTCCACCTGGTGCT 730580 >seq819 Length=180711 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || ||||||| || ||||||| |||| || || Sbjct 9955 AACAGATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAA 10014 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| || || || || |||| || | || ||||| ||||| ||||| | Sbjct 10015 GCTCCGACACCATTGA--CAATGTCAAAGCCAAGATCCAA-GACAAGGAAGGTATTCCCC 10071 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||| || || | || ||||||||||| || | || || | ||||| | | || Sbjct 10072 CAGACCAGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCG 10131 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || || || ||||| || || Sbjct 10132 ACTACAACATCCAGAAGGAGTCCACCCTCCA 10162 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || ||||||| || ||||||| |||| || || Sbjct 178299 AACAGATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAA 178240 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| || || || || |||| || | || ||||| ||||| ||||| | Sbjct 178239 GCTCCGACACCATTGA--CAATGTCAAAGCCAAGATCCAA-GACAAGGAAGGTATTCCCC 178183 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||| || || | || ||||||||||| || | || || | ||||| | | || Sbjct 178182 CAGACCAGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCG 178123 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || || || ||||| || || Sbjct 178122 ACTACAACATCCAGAAGGAGTCCACCCTCCA 178092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316476454330