Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq202 152 6e-32 seq1330 150 2e-31 seq801 150 2e-31 seq162 91.5 2e-13 seq52 91.5 2e-13 seq408 89.7 6e-13 seq3 87.8 2e-12 seq308 86.0 7e-12 seq139 86.0 7e-12 seq83 84.2 2e-11 seq12 84.2 2e-11 >seq202 Length=624202 Score = 152 bits (168), Expect = 6e-32 Identities = 404/609 (66%), Gaps = 11/609 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || ||||| |||||| || || || |||||||| || |||| ||| ||| | Sbjct 31366 TACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAG 31425 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACC 93201 || || | || || | | || || || || ||||||||||| | ||| ||||| || Sbjct 31426 AAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCC 31484 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || || |||||| ||||| || || || || || || ||| |||| Sbjct 31485 CGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGA 31544 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | ||||||| | | ||||| | ||| || ||| | ||||| | || || Sbjct 31545 ---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTC 31601 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| |||| || ||| | |||||| || || ||||| || |||| | || Sbjct 31602 GATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAG 31661 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||||| || || |||| ||||| || || || ||||| |||||||| | || Sbjct 31662 GCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGC 31721 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || | || ||| || || | ||| ||| | ||||||||||| ||| || || || Sbjct 31722 CTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACAATGCCGTC 31781 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 ||| || || || || || | || ||| | || || |||| | || || Sbjct 31782 GGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGC 31841 Query 93562 ATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||| | ||||| || | | || ||||| || ||| | ||||| || || || Sbjct 31842 TTCCCACTGGCGGAT--GTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCC 31899 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACG 93678 || || || |||||||| |||||||| ||| | || || || ||||| || ||| || || Sbjct 31900 TCGGCCTTCTTGTACATTTCCCATATTTCTGGGTACTGGATCGGAAACAT-ACAGAAGCG 31958 Query 93679 ATTAGGGTT 93687 || |||||| Sbjct 31959 ATCAGGGTT 31967 >seq1330 Length=73179 Score = 150 bits (166), Expect = 2e-31 Identities = 415/628 (66%), Gaps = 11/628 (2%) Strand=Plus/Minus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || ||||| |||||| || || || |||||||| || |||| ||| ||| | Sbjct 26771 TACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAG 26712 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACC 93201 || || | || || | | || || || || ||||||||||| | ||| ||||| || Sbjct 26711 AAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCC 26653 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || || |||||| ||||| ||||| || || || || ||| |||| Sbjct 26652 CGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA 26593 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | ||||||| | | ||||| | ||| || ||| | || || | || || Sbjct 26592 ---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTC 26536 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| |||| || ||| | |||||| || || ||||| || |||| | || Sbjct 26535 GATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAG 26476 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||||| || || |||| ||||| || || || ||||| |||||||| | || Sbjct 26475 GCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGC 26416 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || | || ||| || || | ||| ||| | ||||||||||| ||| || ||||| Sbjct 26415 CTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATC 26356 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 ||| || || || || || | || ||| | || || |||| | || || Sbjct 26355 GGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGC 26296 Query 93562 ATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||| | ||||| || | | || ||||| || ||| | ||||| || ||||| Sbjct 26295 TTCCCAGTGGCGGAT--GTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCC 26238 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACG 93678 || || || |||||||| |||||||| || | || || || ||||| || ||| || || Sbjct 26237 TCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCG 26179 Query 93679 ATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | |||||| ||| | ||||||| Sbjct 26178 GTCCGGGTTAGGAGCTAGCAGCGGCTCT 26151 Score = 150 bits (166), Expect = 2e-31 Identities = 415/628 (66%), Gaps = 11/628 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || ||||| |||||| || || || |||||||| || |||| ||| ||| | Sbjct 46409 TACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAG 46468 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACC 93201 || || | || || | | || || || || ||||||||||| | ||| ||||| || Sbjct 46469 AAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCC 46527 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || || |||||| ||||| ||||| || || || || ||| |||| Sbjct 46528 CGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA 46587 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | ||||||| | | ||||| | ||| || ||| | || || | || || Sbjct 46588 ---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTC 46644 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| |||| || ||| | |||||| || || ||||| || |||| | || Sbjct 46645 GATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAG 46704 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||||| || || |||| ||||| || || || ||||| |||||||| | || Sbjct 46705 GCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGC 46764 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || | || ||| || || | ||| ||| | ||||||||||| ||| || ||||| Sbjct 46765 CTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATC 46824 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 ||| || || || || || | || ||| | || || |||| | || || Sbjct 46825 GGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGC 46884 Query 93562 ATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||| | ||||| || | | || ||||| || ||| | ||||| || ||||| Sbjct 46885 TTCCCAGTGGCGGAT--GTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCC 46942 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACG 93678 || || || |||||||| |||||||| || | || || || ||||| || ||| || || Sbjct 46943 TCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCG 47001 Query 93679 ATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | |||||| ||| | ||||||| Sbjct 47002 GTCCGGGTTAGGAGCTAGCAGCGGCTCT 47029 >seq801 Length=188201 Score = 150 bits (166), Expect = 2e-31 Identities = 415/628 (66%), Gaps = 11/628 (2%) Strand=Plus/Minus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || ||||| |||||| || || || |||||||| || |||| ||| ||| | Sbjct 11772 TACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAG 11713 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACC 93201 || || | || || | | || || || || ||||||||||| | ||| ||||| || Sbjct 11712 AAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCC 11654 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || || |||||| ||||| ||||| || || || || ||| |||| Sbjct 11653 CGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA 11594 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | ||||||| | | ||||| | ||| || ||| | || || | || || Sbjct 11593 ---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTC 11537 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| |||| || ||| | |||||| || || ||||| || |||| | || Sbjct 11536 GATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAG 11477 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||||| || || |||| ||||| || || || ||||| |||||||| | || Sbjct 11476 GCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGC 11417 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || | || ||| || || | ||| ||| | ||||||||||| ||| || ||||| Sbjct 11416 CTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATC 11357 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 ||| || || || || || | || ||| | || || |||| | || || Sbjct 11356 GGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGC 11297 Query 93562 ATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||| | ||||| || | | || ||||| || ||| | ||||| || ||||| Sbjct 11296 TTCCCAGTGGCGGAT--GTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCC 11239 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACG 93678 || || || |||||||| |||||||| || | || || || ||||| || ||| || || Sbjct 11238 TCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCG 11180 Query 93679 ATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | |||||| ||| | ||||||| Sbjct 11179 GTCCGGGTTAGGAGCTAGCAGCGGCTCT 11152 >seq162 Length=725586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 649998 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 650057 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 650058 GCGTGGGTTCAAATCCCACTTCTGACA 650084 >seq52 Length=1194851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1165250 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1165309 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 1165310 TGGGTTCAAATCCCACTTCTGACAAAT 1165336 >seq408 Length=406475 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 396016 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 396075 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||| || ||||| ||||| | || |||| ||||||| Sbjct 396076 TGGGTTCAAATCCCACTTCTGAC-ATTTGCTATTTTAATTTTT 396117 >seq3 Length=3914344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 2862343 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 2862284 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 2862283 GTGGGTTCAAATCCCACTTCTGACA 2862259 >seq308 Length=496331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 873 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 814 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 813 TGGGTTCAAATCCCACTTCTGACA 790 >seq139 Length=803459 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 764595 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 764538 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 764537 TTCAAATCCCACAGCTGTCAAATT 764514 >seq83 Length=992008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 860746 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 860803 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 860804 GGGTTCAAATCCCACAGCTGTCAAA 860828 >seq12 Length=1676446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 461661 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 461720 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||| || ||||| ||||||||| Sbjct 461721 GTGGGTTCAAATCCCACTTCTGACAAAT 461748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845611621680